Panoramic stitching of single cell data
☆294Jul 14, 2025Updated last year
Alternatives and similar repositories for scanorama
Users that are interested in scanorama are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- Batch balanced KNN☆179Oct 11, 2023Updated 2 years ago
- Reference mapping for single-cell genomics☆407Jun 26, 2026Updated 2 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆670Jun 5, 2026Updated 2 months ago
- CellRank: dynamics from multi-view single-cell data☆456Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- R package for integrating and analyzing multiple single-cell datasets☆432Aug 18, 2026Updated 2 weeks ago
- Benchmarking analysis of data integration tools☆430Apr 27, 2026Updated 4 months ago
- Deep probabilistic analysis of single-cell and spatial omics data☆1,684Updated this week
- RNA Velocity generalized through dynamical modeling☆510Feb 25, 2026Updated 6 months ago
- A package to help convert different single-cell data formats to each other☆470Feb 20, 2026Updated 6 months ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆179Jan 26, 2024Updated 2 years ago
- Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.☆196Updated this week
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆419Updated this week
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆230Jul 2, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- 🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.☆282Apr 26, 2026Updated 4 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆244May 23, 2020Updated 6 years ago
- Tools and methods for analysis of single cell assay data in R☆264Oct 17, 2025Updated 10 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆347Apr 23, 2024Updated 2 years ago
- ☆363Dec 9, 2021Updated 4 years ago
- Automated, probabilistic assignment of cell types in scRNA-seq data☆215Jan 9, 2023Updated 3 years ago
- Single-cell analysis in Python. Scales to >100M cells.☆2,551Updated this week
- An implementation of MNN (Mutual Nearest Neighbors) correct in python.☆76Jan 9, 2023Updated 3 years ago
- An overview of algorithms for estimating pseudotime in single-cell RNA-seq data☆443Aug 12, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A tool for semi-automatic cell type classification☆502May 22, 2026Updated 3 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆496Apr 5, 2024Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆205Oct 21, 2025Updated 10 months ago
- NicheNet: predict active ligand-target links between interacting cells☆674Jun 1, 2026Updated 3 months ago
- Convert between AnnData and SingleCellExperiment☆152Updated this week
- Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq an…☆1,591Dec 11, 2022Updated 3 years ago
- Single cell perturbation prediction☆355Dec 5, 2024Updated last year
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological …☆388Oct 3, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A scanpy extension to analyse single-cell TCR and BCR data.☆265Updated this week
- Metacells - Single-cell RNA Sequencing Analysis☆128Aug 19, 2026Updated 2 weeks ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆92Dec 4, 2025Updated 9 months ago
- URD - Reconstruction of Branching Developmental Trajectories☆128Jun 29, 2021Updated 5 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago
- ☆304Jun 16, 2026Updated 2 months ago
- pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which…☆633Jun 26, 2025Updated last year