brianhie / scanoramaLinks
Panoramic stitching of single cell data
☆292Updated 3 months ago
Alternatives and similar repositories for scanorama
Users that are interested in scanorama are comparing it to the libraries listed below
Sorting:
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆361Updated 3 months ago
- Comparison of methods for trajectory inference on single-cell data 🥇☆216Updated 2 years ago
- Tools and methods for analysis of single cell assay data in R☆256Updated 2 weeks ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆168Updated last year
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆218Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 3 years ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆168Updated 2 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆156Updated 4 years ago
- Benchmarking computational single cell ATAC-seq methods☆184Updated 4 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆233Updated 2 years ago
- Scanpy Tutorials.☆225Updated this week
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆299Updated 2 weeks ago
- A package to help convert different single-cell data formats to each other☆444Updated last year
- Bench-marking classification tools for scRNA-seq data☆189Updated 3 years ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆237Updated 9 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆310Updated last year
- Interpretation of cell states using reference single-cell maps☆295Updated 2 months ago
- ☆275Updated 11 months ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆193Updated 2 years ago
- Differential expression analysis for single-cell RNA-seq data.☆204Updated last week
- Methods for detecting doublets in single-cell sequencing data☆212Updated last week
- ☆257Updated 2 weeks ago
- LIANA: a LIgand-receptor ANalysis frAmework☆222Updated last year
- RNA velocity estimation in Python☆173Updated 3 weeks ago
- A Bayesian model for compositional single-cell data analysis☆178Updated 2 years ago
- A tool for detecting somatic variants in single cell data☆215Updated last year
- A tool for semi-automatic cell type classification☆419Updated 2 weeks ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆241Updated 6 months ago
- Multi-subject Single Cell Deconvolution☆275Updated last year