R/Bioconductor package for working with 10x scATACseq data
☆42Nov 13, 2023Updated 2 years ago
Alternatives and similar repositories for scATACutils
Users that are interested in scATACutils are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- cluster stability measurement by subsampling and reclustering with Seurat V3 and V4☆11Jul 9, 2021Updated 4 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆80Mar 16, 2026Updated last week
- Publication Page for Satpathy*, Granja* et al 2019☆95Apr 29, 2020Updated 5 years ago
- Analyzing chromatin accessibility data in R☆18Jun 23, 2023Updated 2 years ago
- ☆28Apr 5, 2025Updated 11 months ago
- my notes for scATACseq analysis☆132Apr 24, 2024Updated last year
- R package with motifs for use with chromVAR☆29Nov 17, 2017Updated 8 years ago
- Comparison of single cell normalization strategies☆10Aug 13, 2021Updated 4 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 5 years ago
- Harvard FAS informatics scRNAseq workshop website☆39Aug 8, 2019Updated 6 years ago
- RNAseq pipeline based on snakemake☆27Mar 8, 2023Updated 3 years ago
- Benchmarking computational single cell ATAC-seq methods☆185Nov 30, 2020Updated 5 years ago
- published papers with a lot of data☆74Apr 5, 2025Updated 11 months ago
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Jul 29, 2020Updated 5 years ago
- Differential Hi-C Data Analysis Workshop https://currentprotocols.onlinelibrary.wiley.com/doi/abs/10.1002/cpbi.76☆15Apr 10, 2021Updated 4 years ago
- ☆87Dec 1, 2024Updated last year
- A python tool to do comparative analysis of mulitple single cell datasets.☆21Oct 25, 2019Updated 6 years ago
- coding exercise using TCGA immune infiltration data☆11Feb 2, 2024Updated 2 years ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Oct 10, 2019Updated 6 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆22Jun 6, 2025Updated 9 months ago
- Workshop on tidytranscriptomics: Performing tidy transcriptomics analyses with tidybulk, tidyverse and tidyheatmap☆26Sep 23, 2020Updated 5 years ago
- Publication Page for MPAL Paper 2019☆84Jun 25, 2020Updated 5 years ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆306Mar 6, 2023Updated 3 years ago
- SCOUP is a probabilistic model to analyze single-cell expression data during differentiation☆10Apr 20, 2017Updated 8 years ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 2 years ago
- Single Cell Cluster Evaluation☆100Jul 28, 2021Updated 4 years ago
- tools and notes for spatial omics☆348Feb 26, 2025Updated last year
- Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq".☆11Jul 5, 2018Updated 7 years ago
- ATACseqQC tutorials for BioC 2019 workshop☆19Jul 28, 2020Updated 5 years ago
- 📺 Discover the latest machine learning / AI courses on YouTube.☆24Nov 26, 2023Updated 2 years ago
- Tools for single-cell data processing☆132May 27, 2024Updated last year
- scRNAseq analysis notes from Ming Tang☆789Dec 2, 2024Updated last year
- scATAC-seq data analysis tools and papers☆129Jul 1, 2025Updated 8 months ago
- Scripts to run and benchmark scRNA-seq cell cluster labeling methods☆48May 23, 2020Updated 5 years ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆448Feb 18, 2025Updated last year
- ☆11Jun 26, 2020Updated 5 years ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Aug 8, 2022Updated 3 years ago