GreenleafLab / ArchRLinks
ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
☆423Updated 4 months ago
Alternatives and similar repositories for ArchR
Users that are interested in ArchR are comparing it to the libraries listed below
Sorting:
- R package for detecting doublets in single-cell RNA sequencing data☆480Updated 3 months ago
- ☆391Updated last week
- Community-provided extensions to Seurat☆340Updated 7 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆317Updated 2 years ago
- ☆356Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆417Updated 2 months ago
- R toolkit for the analysis of single-cell chromatin data☆377Updated 5 months ago
- NicheNet: predict active ligand-target links between interacting cells☆550Updated last week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆299Updated 4 years ago
- A toolkit for single-cell immune profiling☆341Updated this week
- Inferring CNV from Single-Cell RNA-Seq☆625Updated 5 months ago
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆338Updated 11 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆284Updated 2 years ago
- A package to help convert different single-cell data formats to each other☆433Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆327Updated this week
- Collections of library structure and sequence of popular single cell genomic methods☆471Updated last month
- ☆290Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆420Updated this week
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆460Updated last year
- ☆269Updated 8 months ago
- Intro to ChIPseq using HPC☆309Updated 2 years ago
- ☆242Updated last year
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆497Updated last week
- 10x Genomics Single Cell Analysis☆420Updated 5 months ago
- RNA Velocity generalized through dynamical modeling☆451Updated 4 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆386Updated last month
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆429Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipeline☆285Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆225Updated 2 months ago
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆522Updated last year