An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
☆174Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for kBET
Users that are interested in kBET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for integrating and analyzing multiple single-cell datasets☆429Feb 4, 2026Updated 3 months ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated 10 months ago
- Tools and methods for analysis of single cell assay data in R☆263Oct 17, 2025Updated 7 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆327Nov 1, 2022Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆433May 11, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AUCell: score single cells with gene regulatory networks☆191Mar 9, 2024Updated 2 years ago
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆225Apr 26, 2026Updated 3 weeks ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆650May 12, 2026Updated last week
- Methods to compute Local Inverse Simpson's Index (LISI)☆76Sep 2, 2021Updated 4 years ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆251Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆295Jun 17, 2025Updated 11 months ago
- Reference mapping for single-cell genomics☆404Mar 21, 2026Updated 2 months ago
- Single-cell RNA-seq Gene Expression Recovery☆114Nov 28, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- R package for detecting doublets in single-cell RNA sequencing data☆548Mar 21, 2025Updated last year
- A package to help convert different single-cell data formats to each other☆465Feb 20, 2026Updated 3 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆261Jan 10, 2026Updated 4 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆242May 23, 2020Updated 6 years ago
- A Bayesian model for compositional single-cell data analysis☆196Jan 13, 2026Updated 4 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆485Apr 5, 2024Updated 2 years ago
- A tool for unsupervised projection of single cell RNA-seq data☆100Nov 24, 2020Updated 5 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆335Apr 23, 2024Updated 2 years ago
- Geometry-preserving random sampling☆96Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- High dimensional weighted gene co-expression network analysis☆474Mar 13, 2026Updated 2 months ago
- ☆46May 17, 2022Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆253Apr 1, 2026Updated last month
- ☆284Oct 13, 2025Updated 7 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆240Aug 7, 2024Updated last year
- An R-based interface for loom files☆68Jul 9, 2020Updated 5 years ago
- Detect doublets in single-cell RNA-seq data☆86Jul 3, 2019Updated 6 years ago
- Interactively analyze single cell genomic data☆187Jan 14, 2026Updated 4 months ago
- Benchmarking analysis of data integration tools☆415Apr 27, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆77Feb 27, 2023Updated 3 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆339Jul 28, 2020Updated 5 years ago
- ☆49Mar 1, 2018Updated 8 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 7 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆182Dec 18, 2021Updated 4 years ago
- Interpretation of cell states using reference single-cell maps☆319Dec 19, 2025Updated 5 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago