theislab / kBET
An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
☆161Updated last year
Alternatives and similar repositories for kBET:
Users that are interested in kBET are comparing it to the libraries listed below
- chromatin Variability Across Regions (of the genome!)☆169Updated 8 months ago
- Episcanpy: Epigenomics Single Cell Analysis in Python☆142Updated 3 months ago
- A tool for detecting somatic variants in single cell data☆193Updated 6 months ago
- Conversion between scRNA-seq objects☆164Updated this week
- A Bayesian model for compositional single-cell data analysis☆158Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆266Updated 2 years ago
- SingleCellNet: classify single cells across species and platforms☆136Updated last year
- Tools for single-cell data processing☆122Updated 9 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆140Updated 2 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆151Updated 2 years ago
- Clustering scRNAseq by genotypes☆175Updated 4 months ago
- Multi-sample multi-group scRNA-seq analysis tools☆182Updated last month
- Interfaces for HDF5-based Single Cell File Formats☆160Updated last year
- Cell types enrichment analysis☆194Updated 9 months ago
- scDIOR: Single cell data IO softwaRe☆140Updated 3 years ago
- Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data☆226Updated last year
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆221Updated 3 months ago
- ☆163Updated 6 months ago
- R package to access DoRothEA's regulons☆142Updated last year
- Signature Analysis and Visualization for Single-Cell RNA-seq☆165Updated 9 months ago
- Interactively analyze single cell genomic data☆182Updated last month
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆223Updated last year
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.☆190Updated 2 years ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆197Updated 11 months ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆137Updated 3 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆113Updated 6 months ago
- Tools and methods for analysis of single cell assay data in R☆232Updated last year
- Java tools for analyzing Drop-seq data☆125Updated last month
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆91Updated 2 years ago