An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.
☆179Jan 26, 2024Updated 2 years ago
Alternatives and similar repositories for kBET
Users that are interested in kBET are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R package for integrating and analyzing multiple single-cell datasets☆433Aug 18, 2026Updated last month
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 11 months ago
- Panoramic stitching of single cell data☆295Jul 14, 2025Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆345Nov 1, 2022Updated 3 years ago
- AUCell: score single cells with gene regulatory networks☆206Mar 9, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package implementation of Milo for testing for differential abundance in KNN graphs☆450Aug 25, 2026Updated last month
- R package for the joint analysis of multiple single-cell RNA-seq datasets☆232Jul 2, 2026Updated 3 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆676Jun 5, 2026Updated 4 months ago
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆149Apr 5, 2024Updated 2 years ago
- Methods to compute Local Inverse Simpson's Index (LISI)☆80Sep 2, 2021Updated 5 years ago
- Methods for detecting doublets in single-cell sequencing data☆272Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆315Jun 17, 2025Updated last year
- Single-cell RNA-seq Gene Expression Recovery☆116Nov 28, 2024Updated last year
- Reference mapping for single-cell genomics☆412Jun 26, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A package to help convert different single-cell data formats to each other☆471Feb 20, 2026Updated 7 months ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆272Jan 10, 2026Updated 9 months ago
- Mapping out the coarse-grained connectivity structures of complex manifolds.☆247May 23, 2020Updated 6 years ago
- A Bayesian model for compositional single-cell data analysis☆203Jan 13, 2026Updated 8 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆101Nov 24, 2020Updated 5 years ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆497Apr 5, 2024Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆348Apr 23, 2024Updated 2 years ago
- High dimensional weighted gene co-expression network analysis☆494Jun 16, 2026Updated 3 months ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆46May 17, 2022Updated 4 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆262Jun 28, 2026Updated 3 months ago
- ☆308Jun 16, 2026Updated 3 months ago
- LIANA: a LIgand-receptor ANalysis frAmework☆252Aug 7, 2024Updated 2 years ago
- An R-based interface for loom files☆68Jul 9, 2020Updated 6 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆78Feb 27, 2023Updated 3 years ago
- Detect doublets in single-cell RNA-seq data☆85Jul 3, 2019Updated 7 years ago
- Interactively analyze single cell genomic data☆190Updated this week
- ☆30Feb 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Benchmarking analysis of data integration tools☆432Apr 27, 2026Updated 5 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆348Jul 28, 2020Updated 6 years ago
- Code for the MNN manuscript figures☆49Oct 1, 2018Updated 8 years ago
- STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data☆185Dec 18, 2021Updated 4 years ago
- ☆50Mar 1, 2018Updated 8 years ago
- Interpretation of cell states using reference single-cell maps☆327Dec 19, 2025Updated 9 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆321Apr 27, 2023Updated 3 years ago