R toolkit for the analysis of single-cell chromatin data
☆423Jul 2, 2026Updated 2 weeks ago
Alternatives and similar repositories for signac
Users that are interested in signac are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆461Feb 18, 2025Updated last year
- chromatin Variability Across Regions (of the genome!)☆192May 1, 2026Updated 2 months ago
- R toolkit for single cell genomics☆2,771Jul 14, 2026Updated last week
- Analysis Pipeline for Single Cell ATAC-seq☆322Apr 27, 2023Updated 3 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 3 weeks ago
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- ☆461May 26, 2026Updated last month
- High dimensional weighted gene co-expression network analysis☆487Jun 16, 2026Updated last month
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆312Mar 6, 2023Updated 3 years ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆440May 11, 2026Updated 2 months ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆342Apr 23, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- ☆59Mar 18, 2026Updated 4 months ago
- CellRank: dynamics from multi-view single-cell data☆454Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆267Jan 10, 2026Updated 6 months ago
- R package to infer biological activities from omics data using a collection of methods.☆301Dec 16, 2025Updated 7 months ago
- RNA velocity estimation in R☆196Sep 14, 2023Updated 2 years ago
- Interfaces for HDF5-based Single Cell File Formats☆178Nov 4, 2023Updated 2 years ago
- Community-provided extensions to Seurat☆368Jun 29, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A toolkit for single-cell immune profiling☆372Jul 9, 2026Updated last week
- AUCell: score single cells with gene regulatory networks☆199Mar 9, 2024Updated 2 years ago
- Tools for single-cell data processing☆137May 27, 2024Updated 2 years ago
- R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets☆256Jun 28, 2026Updated 3 weeks ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆490Apr 5, 2024Updated 2 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- RNA Velocity generalized through dynamical modeling☆507Feb 25, 2026Updated 4 months ago
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆261Jan 16, 2026Updated 6 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data☆147Apr 5, 2024Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆155Jun 26, 2026Updated 3 weeks ago
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 6 months ago
- Scaling Single Cell Analysis to Millions of Cells☆295Jul 13, 2026Updated last week
- Reference mapping for single-cell genomics☆406Jun 26, 2026Updated 3 weeks ago
- Conversion between scRNA-seq objects☆210May 5, 2026Updated 2 months ago