stuart-lab / signac
R toolkit for the analysis of single-cell chromatin data
☆330Updated last month
Related projects ⓘ
Alternatives and complementary repositories for signac
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆387Updated last week
- Community-provided extensions to Seurat☆306Updated this week
- ☆344Updated 2 weeks ago
- NicheNet: predict active ligand-target links between interacting cells☆489Updated 2 months ago
- R package for detecting doublets in single-cell RNA sequencing data☆416Updated 6 months ago
- A toolkit for single-cell immune profiling☆310Updated this week
- R package implementation of Milo for testing for differential abundance in KNN graphs☆344Updated this week
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆212Updated 8 months ago
- R package for integrating and analyzing multiple single-cell datasets☆391Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆570Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆274Updated 4 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆259Updated 2 years ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆293Updated last month
- A package to help convert different single-cell data formats to each other☆384Updated 8 months ago
- ☆345Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆252Updated this week
- ☆240Updated 2 weeks ago
- Dataset distribution for Seurat☆129Updated last year
- ☆212Updated 4 months ago
- Fast, sensitive and accurate integration of single-cell data with Harmony☆529Updated last week
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆271Updated 7 months ago
- Table of software for the analysis of single-cell RNA-seq data.☆310Updated this week
- High dimensional weighted gene co-expression network analysis☆360Updated last month
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆297Updated 4 months ago
- Analysis Pipeline for Single Cell ATAC-seq☆307Updated last year
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)☆248Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆219Updated this week
- TRAjectory-based Differential Expression analysis for SEQuencing data☆240Updated 11 months ago
- Interfaces for HDF5-based Single Cell File Formats☆153Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆397Updated 6 months ago