stuart-lab / signacLinks
R toolkit for the analysis of single-cell chromatin data
☆393Updated 2 weeks ago
Alternatives and similar repositories for signac
Users that are interested in signac are comparing it to the libraries listed below
Sorting:
- ☆415Updated last month
- R package for detecting doublets in single-cell RNA sequencing data☆501Updated 7 months ago
- Community-provided extensions to Seurat☆348Updated 11 months ago
- ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)☆433Updated 8 months ago
- A toolkit for single-cell immune profiling☆353Updated last week
- NicheNet: predict active ligand-target links between interacting cells☆578Updated last week
- Inferring CNV from Single-Cell RNA-Seq☆646Updated 8 months ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆306Updated 5 years ago
- ☆360Updated 3 years ago
- R package for integrating and analyzing multiple single-cell datasets☆422Updated last month
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆240Updated 5 months ago
- R package implementation of Milo for testing for differential abundance in KNN graphs☆398Updated last month
- A package to help convert different single-cell data formats to each other☆444Updated last year
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆296Updated 2 years ago
- ☆256Updated last week
- High dimensional weighted gene co-expression network analysis☆438Updated last month
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆276Updated last week
- Fast, sensitive and accurate integration of single-cell data with Harmony☆601Updated 2 weeks ago
- ☆275Updated 11 months ago
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics☆483Updated 2 weeks ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆506Updated 2 weeks ago
- Analysis Pipeline for Single Cell ATAC-seq☆320Updated 2 years ago
- Functions for identifying and characterizing continuous developmental trajectories in single-cell data.☆310Updated last year
- CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.☆360Updated 2 months ago
- SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.☆467Updated last year
- Table of software for the analysis of single-cell RNA-seq data.☆331Updated this week
- Interpretation of cell states using reference single-cell maps☆295Updated 2 months ago
- Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial …☆405Updated 3 months ago
- Single-cell Transcriptome and Regulome Analysis Pipeline☆293Updated 2 years ago
- ☆289Updated 3 years ago