alesssia / YAMP
YAMP: Yet Another Metagenomic Pipeline
☆58Updated last year
Alternatives and similar repositories for YAMP:
Users that are interested in YAMP are comparing it to the libraries listed below
- Maximum likelihood demultiplexing☆47Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 5 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆46Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Updated Kraken DB install scripts to cope with new-ish NCBI structure☆46Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated last month
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆91Updated 3 weeks ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- ONT assembly and Illumina polishing pipeline☆91Updated 4 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs☆51Updated last year
- ☆81Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆105Updated 2 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆73Updated last year
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- Micro 612 genomics workshop☆37Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- ☆23Updated 6 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Tools and software library developed by the ONT Applications group☆62Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆55Updated 4 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆66Updated 7 years ago