alesssia / YAMPView external linksLinks
YAMP: Yet Another Metagenomic Pipeline
☆62Jun 5, 2023Updated 2 years ago
Alternatives and similar repositories for YAMP
Users that are interested in YAMP are comparing it to the libraries listed below
Sorting:
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 7 years ago
- Raspir, the rare species identifier☆11Oct 19, 2023Updated 2 years ago
- ☆19Jan 16, 2024Updated 2 years ago
- MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-thro…☆26Nov 14, 2022Updated 3 years ago
- See the main fork of this repository here >>>☆39Jan 11, 2026Updated last month
- A robust, extensible metagenomics pipeline☆174Feb 9, 2026Updated last week
- Fast genealogical relationship evaluation of bacterial isolates with WGS data.☆12Jan 17, 2022Updated 4 years ago
- ☆10Feb 28, 2018Updated 7 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Oct 6, 2022Updated 3 years ago
- Genotype Imputation Pipeline for H3Africa☆24Nov 5, 2024Updated last year
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆246Aug 10, 2025Updated 6 months ago
- Bioinformatics curated workflows that use Biocontainers tools☆19Jun 11, 2019Updated 6 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- Antimicrobial Resistance Identification By Assembly☆184Oct 12, 2023Updated 2 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆132Oct 6, 2023Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆15Dec 14, 2024Updated last year
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 2 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated 10 months ago
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- List of IARC bioinformatics pipelines and resources☆56Nov 24, 2025Updated 2 months ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Sep 16, 2017Updated 8 years ago
- 🌈 Interactive analysis of metagenomics data☆442Sep 17, 2025Updated 4 months ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆162Oct 11, 2024Updated last year
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Jul 3, 2018Updated 7 years ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Dec 14, 2022Updated 3 years ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Apr 25, 2025Updated 9 months ago
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets☆17Sep 19, 2023Updated 2 years ago
- ☆16May 22, 2023Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated 11 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- Customer workshop materials☆19May 11, 2023Updated 2 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 3 years ago
- ☆14May 12, 2023Updated 2 years ago
- 🔝 The amazing Galaxy Tour Builder web extension. // See demo 👉☆17Jun 2, 2020Updated 5 years ago