motu-tool / mOTUs
motus - a tool for marker gene-based OTU (mOTU) profiling
☆145Updated 4 months ago
Related projects: ⓘ
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆98Updated this week
- Pipeline for metabolic annotation of microbial genomes☆138Updated 2 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆106Updated 3 months ago
- A user-friendly workflow for phylogenomics☆197Updated this week
- FunGAP: fungal Genome Annotation Pipeline☆108Updated 10 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆121Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆105Updated 10 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆138Updated last week
- Download files from NCBI Entrez by accession☆105Updated 2 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆164Updated last month
- Processing pipeline for pan-genome visulization and exploration☆132Updated 11 months ago
- fast phage annotation program☆144Updated 2 months ago
- Find clustered hits from a BLAST search☆94Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆164Updated 3 months ago
- geNomad: Identification of mobile genetic elements☆187Updated 3 weeks ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆186Updated 2 months ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆107Updated 4 months ago
- Pan-genome wide association studies☆147Updated 3 months ago
- BSR-Based Allele Calling Algorithm☆129Updated last week
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆116Updated 3 months ago
- Convert various sequence formats to FASTA☆126Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆141Updated 4 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆59Updated 9 months ago
- Bioinformatics program inStrain☆137Updated 4 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆68Updated last year
- MGnify genome analysis pipeline☆97Updated last month
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated last year
- DDBJ Fast Annotation and Submission Tool☆76Updated 3 weeks ago
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆142Updated 3 weeks ago
- Tool to plot synteny and structural rearrangements between genomes☆276Updated 3 months ago