motus - a tool for marker gene-based OTU (mOTU) profiling
☆177Jun 11, 2026Updated this week
Alternatives and similar repositories for mOTUs
Users that are interested in mOTUs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A hybrid assembly and MAG recovery pipeline (and more!)☆107Jun 5, 2026Updated last week
- Variational autoencoder for metagenomic binning☆328Apr 27, 2026Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆354Mar 16, 2026Updated 3 months ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆311Feb 3, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CAMISIM: Simulating metagenomes and microbial communities☆226May 27, 2026Updated 2 weeks ago
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆74Mar 14, 2026Updated 3 months ago
- Rapid comparison and dereplication of genomes☆346Nov 10, 2025Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆409Jun 8, 2026Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆246Jun 5, 2026Updated last week
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆253May 13, 2026Updated last month
- Read alignment statistics for metagenomics☆399Updated this week
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆74Dec 1, 2025Updated 6 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆168Jun 10, 2026Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆652May 15, 2026Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆375Aug 1, 2025Updated 10 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆267Mar 20, 2025Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆227Mar 24, 2026Updated 2 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆189Updated this week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆266May 13, 2026Updated last month
- SemiBin: metagenomics binning with self-supervised deep learning☆164Jun 7, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆607May 20, 2026Updated 3 weeks ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆334Jun 3, 2026Updated last week
- REference Sequence annotation and CuRatIon Pipeline☆100Jun 3, 2026Updated last week
- Pan-genome inference and genotyping with long noisy or short accurate reads☆118Dec 13, 2024Updated last year
- DAS Tool☆174May 2, 2024Updated 2 years ago
- Predict AMPs in (meta)genomes and peptides☆93Nov 24, 2025Updated 6 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆472Jul 28, 2023Updated 2 years ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆231Apr 1, 2026Updated 2 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- geNomad: Identification of mobile genetic elements☆316Mar 29, 2026Updated 2 months ago
- Reorients assembled microbial sequences☆138Jun 5, 2026Updated last week
- Follow up to Grace Blackwell's 661k dataset, for 2023☆143Jun 10, 2026Updated last week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆189Mar 17, 2026Updated 2 months ago
- A taxonomic classifier for shotgun metagenomics reads☆11Apr 4, 2025Updated last year
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆72May 23, 2026Updated 3 weeks ago
- antiSMASH☆257Updated this week