motu-tool / mOTUsLinks
motus - a tool for marker gene-based OTU (mOTU) profiling
☆162Updated 2 weeks ago
Alternatives and similar repositories for mOTUs
Users that are interested in mOTUs are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 8 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆154Updated 7 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆144Updated 2 weeks ago
- Bioinformatics Tools☆89Updated 2 weeks ago
- Download files from NCBI Entrez by accession☆131Updated last year
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆122Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆88Updated 5 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆265Updated last month
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆127Updated last month
- A user-friendly workflow for phylogenomics☆222Updated 2 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆229Updated last month
- Bioinformatics program inStrain☆180Updated 7 months ago
- Supporting code for uncultivated gut virus manuscript☆76Updated 2 years ago
- Open-source usearch☆123Updated 3 months ago
- Development version of Easyfig☆102Updated last year
- A robust, extensible metagenomics pipeline☆174Updated last week
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- MGnify genome analysis pipeline☆109Updated this week
- Generating iToL annotations from Spreadsheet or CSV files☆107Updated 5 years ago
- Similarity networks of biosynthetic gene clusters☆145Updated last month
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆36Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year