motu-tool / mOTUsLinks
motus - a tool for marker gene-based OTU (mOTU) profiling
☆161Updated last year
Alternatives and similar repositories for mOTUs
Users that are interested in mOTUs are comparing it to the libraries listed below
Sorting:
- Pipeline for metabolic annotation of microbial genomes☆150Updated 7 months ago
- Download files from NCBI Entrez by accession☆130Updated last year
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 5 months ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 5 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆153Updated 6 months ago
- Find clustered hits from a BLAST search☆126Updated this week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- A user-friendly workflow for phylogenomics☆221Updated 3 weeks ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆125Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆262Updated last month
- Convert various sequence formats to FASTA☆139Updated 3 years ago
- Bioinformatics program inStrain☆178Updated 6 months ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆79Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆219Updated 3 weeks ago
- Pan-genome wide association studies☆205Updated last year
- Open-source usearch☆122Updated 2 months ago
- Bioinformatics Tools☆89Updated last month
- A robust, extensible metagenomics pipeline☆173Updated this week
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆121Updated last year
- Assessing the quality of metagenome-derived genome bins using machine learning☆235Updated 7 months ago
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆87Updated 4 months ago
- snipit: summarise snps relative to your reference sequence☆162Updated last month
- Supporting code for uncultivated gut virus manuscript☆75Updated 2 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago
- ☆85Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆195Updated last month
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆133Updated last week