Alternatives and similar repositories for SURPI-plus-dist

Users that are interested in SURPI-plus-dist are comparing it to the libraries listed below

• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 3 years ago
• fanglab / mbin
  mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
  ☆25Updated 2 years ago
• nanoporetech / pipeline-umi-amplicon
  Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers
  ☆34Updated last year
• ArifaKhanLab / RVDB
  A reference viral database (RVDB)
  ☆26Updated 6 years ago
• zjshi / snv_analysis_almeida2019
  ☆21Updated 5 years ago
• segalab / SGVFinder
  ☆32Updated 2 years ago
• emepyc / Blast2lca
  Calculates the lowest common ancestors of each query sequence in a Blast result
  ☆31Updated 7 years ago
• B-UMMI / long-read-catalog
  catalog for long-read sequencing tools
  ☆32Updated 2 years ago
• Serka-M / Digester-MultiSequencing
  Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing
  ☆21Updated 2 years ago
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated 2 years ago
• elimoss / metagenomics_workflows
  Workflows for metagenomic sequence data processing and analysis.
  ☆16Updated 6 years ago
• AliTVTeam / AliTV
  Visualize whole genome alignments as linear maps
  ☆73Updated 2 months ago
• ddarriba / prottest3
  Automatically exported from code.google.com/p/prottest3
  ☆37Updated 7 years ago
• Psy-Fer / interARTIC
  InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic network pipelines..
  ☆31Updated last year
• ksahlin / isONcorrect
  Error correction of ONT transcript reads
  ☆58Updated 2 years ago
• Sun-Yanbo / FasParser
  A Windows Graphical Platform for Batch Manipulation of Tremendous Amount of Sequence Data
  ☆30Updated 4 years ago
• marbl / harvest
  ☆53Updated 4 years ago
• metagenomics / denbi-nanopore-training
  de.NBI Nanopore Training Course
  ☆20Updated 3 months ago
• xfengnefx / hifiasm-meta
  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.
  ☆69Updated last week
• chiulab / MSSPE-design
  ☆12Updated 5 years ago
• sanger-pathogens / assembly_improvement
  Improve the quality of a denovo assembly by scaffolding and gap filling
  ☆56Updated 4 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆62Updated 5 years ago
• Bgi-LUSH / GPMeta
  A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.
  ☆25Updated last year
• nanoporetech / ont_tutorial_basicqc
  A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
  ☆31Updated 4 years ago
• SegataLab / cmseq
  Set of utilities on sequences and BAM files
  ☆26Updated 3 years ago
• gear-genomics / dicey
  In-silico PCR, primer design and padlock design for in-situ sequencing
  ☆51Updated 2 months ago
• broadinstitute / GATK-for-Microbes
  ☆29Updated 4 years ago
• rrwick / Metagenomics-Index-Correction
  ☆83Updated 2 years ago
• Finn-Lab / MGS-gut
  Analysing Metagenomic Species (MGS)
  ☆41Updated 4 years ago