benjjneb / decontamLinks
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
☆165Updated last month
Alternatives and similar repositories for decontam
Users that are interested in decontam are comparing it to the libraries listed below
Sorting:
- A list of R environment based tools for microbiome data exploration, statistical analysis and visualization☆115Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆95Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆91Updated last year
- ☆62Updated 5 years ago
- Make Picrust2 Output Analysis and Visualization Easier☆164Updated 2 weeks ago
- Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tes…☆91Updated 2 months ago
- r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)☆71Updated last year
- Statistical Analysis of Metagenomic Profiles☆93Updated 5 years ago
- Metatranscriptomics Tutorial☆64Updated 2 years ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆120Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆148Updated 11 months ago
- 🍄 Qiime2 ITS classifiers for the UNITE database☆45Updated 2 months ago
- ☆78Updated last year
- ☆84Updated last year
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆123Updated last week
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆85Updated 3 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆35Updated 2 years ago
- Fantaxtic - Nested Bar Plots for Phyloseq Data☆32Updated last year
- Course material for the metagenomics course☆46Updated 3 years ago
- Import qiime2 artifacts to R☆173Updated 10 months ago
- Curated Metagenomic Data of the Human Microbiome☆143Updated last month
- REference Sequence annotation and CuRatIon Pipeline☆97Updated this week
- Generating iToL annotations from Spreadsheet or CSV files☆106Updated 5 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Updated 9 years ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆104Updated 8 months ago
- Convert various sequence formats to FASTA☆138Updated 3 years ago
- Protist Ribosomal Reference database (PR2) - SSU rRNA gene database☆83Updated 3 weeks ago
- Fast expectation maximization for microbial source tracking☆131Updated last year
- A companion R package for the MicrobiomeAnalyst web server☆127Updated last month
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago