De novo Extraction of Strains from MetAgeNomes
☆72Jun 17, 2020Updated 5 years ago
Alternatives and similar repositories for DESMAN
Users that are interested in DESMAN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Strain resolved metagenome simulator☆13Aug 11, 2018Updated 7 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- ☆14Jan 20, 2016Updated 10 years ago
- Parametric sweep of simulated microbial communities and metagenomic sequencing.☆11Jul 15, 2022Updated 3 years ago
- Partitioning and analysis methods for large, complex sequence datasets☆38Oct 17, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An algorithm for recovering haplotypes from metagenomes☆30Jun 29, 2021Updated 4 years ago
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66May 11, 2020Updated 5 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- sensitive and precise assembly of short sequencing reads☆166Oct 11, 2024Updated last year
- ☆20Jan 12, 2017Updated 9 years ago
- StrainFinder☆30Jul 8, 2018Updated 7 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆216Jul 1, 2025Updated 9 months ago
- Graph-based assembly phasing☆93Nov 25, 2025Updated 4 months ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- A genomic minhashing implementation in Rust☆103Jun 17, 2025Updated 10 months ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Oct 12, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 7 months ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Nov 9, 2022Updated 3 years ago
- blast, shmlast☆21Oct 5, 2020Updated 5 years ago
- An integrated pipeline for estimating strain-level genomic variation from metagenomic data☆133Oct 6, 2023Updated 2 years ago
- hybrid assembly pipeline for bacterial genomes☆636Jul 25, 2024Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data☆137Apr 9, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A selection of short scripts for analyzing microbial genomes☆14Jun 26, 2018Updated 7 years ago
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Apr 22, 2021Updated 4 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Variational autoencoder for metagenomic binning☆320Feb 23, 2026Updated last month
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Split Kmer Analysis☆66May 26, 2022Updated 3 years ago