chrisquince / DESMAN
De novo Extraction of Strains from MetAgeNomes
☆68Updated 4 years ago
Alternatives and similar repositories for DESMAN:
Users that are interested in DESMAN are comparing it to the libraries listed below
- Estimate metagenomic coverage and sequence diversity☆48Updated 7 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated last year
- Split Kmer Analysis☆62Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Visualize whole genome alignments as linear maps☆71Updated 5 months ago
- A toolbox for improving metagenome-assembled genomes.☆63Updated 3 years ago
- de novo virus assembler of Illumina paired reads☆55Updated 3 years ago
- ☆52Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆71Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 3 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Recombination-free trees☆57Updated last year
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- ☆36Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated 11 months ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆60Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- Identify phage regions in bacterial genomes for masking purposes☆30Updated 5 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- ☆80Updated last year
- OPAL: Open-community Profiling Assessment tooL☆28Updated 2 months ago
- Simulate metagenomic short reads from one or more populations.☆26Updated last month
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago