MicrobeLab / DeepMicrobes
DeepMicrobes: taxonomic classification for metagenomics with deep learning
☆88Updated 2 years ago
Alternatives and similar repositories for DeepMicrobes:
Users that are interested in DeepMicrobes are comparing it to the libraries listed below
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated 9 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆67Updated last year
- Supporting code for uncultivated gut virus manuscript☆68Updated last year
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- MEGAN Community Edition☆68Updated 6 months ago
- nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nano…☆68Updated 2 years ago
- a tool for inferring species tree from sequencing reads☆146Updated last month
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- viralVerify: viral contig verification tool☆66Updated 3 years ago
- Course material for the metagenomics course☆43Updated 2 years ago
- Rapid and scalable correlation estimation for compositional data☆83Updated 8 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆204Updated 2 weeks ago
- DDBJ Fast Annotation and Submission Tool☆78Updated 3 weeks ago
- Woltka: a versatile meta'omic data classifier☆71Updated 3 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆112Updated last week
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- Bioinformatics tool for Locus Visualisation☆83Updated this week
- List of genome assembly tools☆54Updated 2 weeks ago
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- Metatranscriptomics Tutorial☆60Updated last year
- Bioinformatics program inStrain☆155Updated 8 months ago
- ☆46Updated 11 months ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆124Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago