Metagenomic binning suite
☆29Sep 30, 2022Updated 4 years ago
Alternatives and similar repositories for GroopM
Users that are interested in GroopM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 7 months ago
- Programs and documentation for the SAMSA pipeline, version 1.0☆16Dec 16, 2019Updated 6 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Mar 4, 2019Updated 7 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Clustering cONtigs with COverage and ComposiTion☆140Mar 6, 2020Updated 6 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Interactive tools for metagenome visualization and binning in R☆27Jun 28, 2018Updated 8 years ago
- The CRISPR assembler☆36May 13, 2021Updated 5 years ago
- DAS Tool☆177Oct 9, 2026Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆216Aug 21, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Improvement of metagenome-assembled genomes☆59Mar 17, 2020Updated 6 years ago
- Set of tools for viral metagenomics.☆18Aug 17, 2026Updated 2 months ago
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆408Updated this week
- D3 based visualisation for comparative genomics☆15Oct 6, 2016Updated 10 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆623Updated this week
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Metagenomics-focused BAM file manipulation☆15Jul 8, 2019Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Dec 23, 2024Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆26Dec 26, 2022Updated 3 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- A powerful Perl module for simulating the genome digestions by restriction enzymes☆14Sep 10, 2024Updated 2 years ago
- blast, shmlast☆21Oct 5, 2020Updated 6 years ago
- Create your own PanViz visualizations☆21Nov 20, 2017Updated 8 years ago
- Phylogenetic and taxonomic analysis for genomes and metagenomes☆82Feb 17, 2016Updated 10 years ago
- Experiments for "Scaling read aligners to hundreds of threads on general-purpose processors"☆11Jun 8, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆133Jul 9, 2023Updated 3 years ago
- Various scripts used at the EnvGen group, directed towards metagenomic analysis.☆15Apr 28, 2020Updated 6 years ago
- sensitive and precise assembly of short sequencing reads☆171Oct 11, 2024Updated 2 years ago
- An example of a data analysis pipeline using Make☆17Jul 26, 2016Updated 10 years ago
- ☆23Apr 3, 2023Updated 3 years ago
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- Tool to easily install QIIME's dependencies on Linux systems☆35Oct 14, 2015Updated 11 years ago