centre-for-microbiome-research / GroopMLinks
Metagenomic binning suite
☆29Updated 2 years ago
Alternatives and similar repositories for GroopM
Users that are interested in GroopM are comparing it to the libraries listed below
Sorting:
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- ☆53Updated 4 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Improving genome bins through the combination of different binning programs☆31Updated 2 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆49Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- strain-level analysis tools☆38Updated 8 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆32Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Strain Resolution ON Graphs☆48Updated last year
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- MAGScoT - a MAG scoring and refinement tool☆35Updated 9 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- reference-based long read assemblies of bacterial genomes☆50Updated 3 years ago
- Intra-species bacterial contamination detection☆25Updated 5 months ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 3 years ago
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Kraken(2) database based on the GTDB project☆27Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆20Updated 8 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 3 years ago
- Gene-flank analysis tool☆28Updated 6 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Updated last year