philippmuench / plasmidminerLinks
in silico plasmid extraction
☆13Updated 8 years ago
Alternatives and similar repositories for plasmidminer
Users that are interested in plasmidminer are comparing it to the libraries listed below
Sorting:
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- blast, shmlast☆21Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- reference free variant assembly☆34Updated 2 years ago
- ☆13Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Northern Arizona SNP Pipeline☆20Updated 11 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- ☆15Updated last year
- Strain resolved metagenome simulator☆13Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Real-time species-typing visualisation for nanopore data.☆13Updated 2 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 7 years ago
- Mapping NCBI Genbank accession to GTDB accession☆13Updated 4 years ago
- Parallel implementation of the LAST aligner☆18Updated 8 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- ☆10Updated 7 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- NCBI Pathogen Detection Portal toolkit☆11Updated 2 years ago