philippmuench / plasmidminer

Related projects ⓘ

Alternatives and complementary repositories for plasmidminer

• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆14Updated 5 months ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• sanger-pathogens / panito
  Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment
  ☆16Updated 5 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆14Updated 8 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• shenwei356 / ncbi_acc2gtdb_acc
  Mapping NCBI Genbank accession to GTDB accession
  ☆14Updated 3 years ago
• nickloman / poredb
  ☆19Updated 7 years ago
• zorino / kaamer
  kaamer - protein identification based on amino acid kmers
  ☆11Updated last year
• bede / kindel
  Indel-aware consensus from aligned BAMs
  ☆20Updated last year
• aweimann / traitar
  ☆21Updated last year
• vice87 / gam-ngs
  Genomic Assemblies Merger for NGS
  ☆26Updated 11 months ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 7 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• EvdH0 / poreFUME
  Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing
  ☆12Updated 7 years ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆10Updated last month
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 2 years ago
• imgag / plasmIDent
  ☆15Updated 4 months ago
• mthon / mirlo
  A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
  ☆13Updated 5 years ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• ansariazim / treeBreaker
  Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree
  ☆25Updated 6 years ago
• lanzen / CREST
  CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …
  ☆12Updated 2 years ago
• opencb / hpg-pore
  Nanopore desc
  ☆18Updated 8 years ago
• rrwick / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆8Updated 6 years ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆16Updated 10 months ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 4 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated this week
• chrisquince / StrainMetaSim
  Strain resolved metagenome simulator
  ☆12Updated 6 years ago
• edamame-course / 2016-tutorials
  repo for 2016 EDAMAME tutorials
  ☆11Updated 8 years ago