philippmuench / plasmidminerLinks
in silico plasmid extraction
☆13Updated 7 years ago
Alternatives and similar repositories for plasmidminer
Users that are interested in plasmidminer are comparing it to the libraries listed below
Sorting:
- blast, shmlast☆22Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- ☆14Updated 9 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- reference free variant assembly☆33Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆14Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- ☆19Updated 8 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Genome assembly/prediction/annotation pipeline for the Linux command line☆8Updated 9 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Strain resolved metagenome simulator☆13Updated 6 years ago
- ☆16Updated 7 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Nanopore read de-multiplexer☆13Updated 5 years ago
- Northern Arizona SNP Pipeline☆19Updated 8 months ago
- ☆10Updated 7 years ago
- Parallel implementation of the LAST aligner☆19Updated 8 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago