philippmuench / plasmidminerLinks
in silico plasmid extraction
☆13Updated 8 years ago
Alternatives and similar repositories for plasmidminer
Users that are interested in plasmidminer are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- blast, shmlast☆21Updated 5 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆13Updated 9 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 10 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Mapping NCBI Genbank accession to GTDB accession☆13Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- ☆18Updated 8 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Pathogenicity prediction of bacterial genomes☆17Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- Quickly get coverage statistics given reads and an assembly☆16Updated last year
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- ☆10Updated 7 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- Streaming sequence classification with web services ✓📌☆19Updated 2 years ago
- kaamer - protein identification based on amino acid kmers☆12Updated 2 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Updated 3 years ago
- Very very long reads, indeed☆13Updated 8 years ago
- A message queue for genomic surveillance☆19Updated 4 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆37Updated last month
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆11Updated 3 years ago