vrmarcelino / CCMetagenLinks
Microbiome classification pipeline
☆66Updated last month
Alternatives and similar repositories for CCMetagen
Users that are interested in CCMetagen are comparing it to the libraries listed below
Sorting:
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- A tool for removing redundant genomes from a set of assemblies☆71Updated last year
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- whole genome MLST analysis☆43Updated 2 weeks ago
- ☆41Updated 4 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Identify phage regions in bacterial genomes for masking purposes☆32Updated 5 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆61Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆58Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- ☆72Updated last month
- Bifrost graph gene caller.☆95Updated 9 months ago
- Estimate metagenomic coverage and sequence diversity☆54Updated 10 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 5 years ago
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆48Updated 2 weeks ago
- ☆82Updated last year
- CGView is a Java package for generating high-quality, zoomable maps of circular genomes.☆44Updated 11 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆52Updated last year
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Updated last year
- tools for assessing the accuracy of genome assemblies☆34Updated last year