rdpstaff / Xander_assembler
A gene-targeted assembler tool
☆19Updated 7 years ago
Alternatives and similar repositories for Xander_assembler:
Users that are interested in Xander_assembler are comparing it to the libraries listed below
- An automated assembly pipeline for microbial genomes☆17Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- read cloud assembler☆35Updated 5 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Assign taxonomic ranks based on evolutionary divergence.☆23Updated 2 years ago
- ☆22Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 months ago
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 10 months ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆21Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Intra-species bacterial contamination detection☆25Updated last week
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- Formats Roary output for viewing in FriPan☆11Updated 6 years ago
- Generation of pan-genome profile files using Roary output.☆9Updated 7 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆22Updated 7 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆22Updated 10 months ago
- Predict plasmids from uncorrected long read data☆39Updated 5 years ago
- ☆20Updated 8 years ago
- Gene-flank analysis tool☆27Updated 2 months ago
- MAG Circularization Method☆33Updated 2 years ago