ATLAS - Three commands to start analyzing your metagenome data
☆406May 28, 2026Updated 3 months ago
Alternatives and similar repositories for atlas
Users that are interested in atlas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A complete pipeline for metagenomic analysis☆453Aug 28, 2026Updated 2 weeks ago
- A user-friendly workflow for phylogenomics☆233Updated this week
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆341Updated this week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆235Updated this week
- Read alignment statistics for metagenomics☆406Jul 10, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆621May 20, 2026Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆523Aug 5, 2026Updated last month
- A robust, extensible metagenomics pipeline☆177Updated this week
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆557Updated this week
- Rapid comparison and dereplication of genomes☆354Sep 4, 2026Updated last week
- Pipeline for metabolic annotation of microbial genomes☆155Mar 20, 2025Updated last year
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆432May 20, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆677Aug 7, 2026Updated last month
- A hybrid assembly and MAG recovery pipeline (and more!)☆118Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- DAS Tool☆177May 2, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆318Updated this week
- geNomad: Identification of mobile genetic elements☆331Mar 29, 2026Updated 5 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆482Dec 16, 2025Updated 8 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆384Aug 1, 2025Updated last year
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Jul 28, 2023Updated 3 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆232Jul 16, 2026Updated last month
- 🌈 Interactive analysis of metagenomics data☆453Sep 17, 2025Updated 11 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆411Mar 2, 2026Updated 6 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An analysis and visualization platform for 'omics data☆535Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆298Nov 28, 2024Updated last year
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- Antimicrobial Resistance Identification By Assembly☆186Oct 12, 2023Updated 2 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Updated this week
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Updated this week
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 5 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆278Mar 20, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆359Mar 16, 2026Updated 5 months ago
- Build a partitioned pangenome graph from microbial genomes☆313Updated this week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆274May 13, 2026Updated 4 months ago
- Gene cluster comparison figure generator☆654Dec 22, 2025Updated 8 months ago
- Fast genome-wide functional annotation through orthology assignment☆777Aug 13, 2026Updated last month
- Assembly and binning of metagenomes☆320Updated this week
- Scripts to download genomes from the NCBI FTP servers☆1,085Apr 7, 2026Updated 5 months ago