metagenome-atlas / atlasLinks
ATLAS - Three commands to start analyzing your metagenome data
☆400Updated last month
Alternatives and similar repositories for atlas
Users that are interested in atlas are comparing it to the libraries listed below
Sorting:
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆401Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆363Updated 2 months ago
- A complete pipeline for metagenomic analysis☆441Updated last month
- Eukaryotic Genome Annotation Pipeline☆375Updated last week
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆253Updated last year
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆454Updated 2 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆591Updated last week
- A flexible pipeline for complete analysis of bacterial genomes☆494Updated last month
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆401Updated 7 months ago
- Rapid large-scale prokaryote pan genome analysis☆363Updated 2 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆314Updated last month
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆333Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu …☆443Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆450Updated last year
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆231Updated last month
- Build a partitioned pangenome graph from microbial genomes☆291Updated last month
- Gene cluster comparison figure generator☆631Updated 3 weeks ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆362Updated 5 months ago
- bioBakery tools for meta'omic profiling☆302Updated 7 months ago
- Rapid comparison and dereplication of genomes☆326Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆391Updated last month
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 5 months ago
- Bacterial ribosomal RNA predictor☆272Updated last week
- Genome assembly evaluation tool☆489Updated last year
- Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.☆386Updated 7 months ago
- 🌈 Interactive analysis of metagenomics data☆438Updated 4 months ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆570Updated last week
- Pilon is an automated genome assembly improvement and variant detection tool☆374Updated 3 years ago
- Mass screening of contigs for antimicrobial and virulence genes☆468Updated last month
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆454Updated 2 years ago