metagenome-atlas / atlasLinks
ATLAS - Three commands to start analyzing your metagenome data
☆393Updated 2 months ago
Alternatives and similar repositories for atlas
Users that are interested in atlas are comparing it to the libraries listed below
Sorting:
- A complete pipeline for metagenomic analysis☆421Updated last week
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆375Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆342Updated last month
- Eukaryotic Genome Annotation Pipeline☆356Updated last week
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆532Updated last week
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆242Updated 11 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆464Updated last month
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆345Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆311Updated 4 months ago
- Gene cluster comparison figure generator☆590Updated 7 months ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆376Updated last month
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆288Updated last week
- Rapid comparison and dereplication of genomes☆302Updated last month
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆351Updated 3 weeks ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆203Updated 10 months ago
- bioBakery tools for meta'omic profiling☆283Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆428Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆235Updated 4 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆430Updated last year
- Mass screening of contigs for antimicrobial and virulence genes☆428Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆292Updated 2 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆422Updated 6 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆270Updated 6 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- customizable pipeline to identify viral sequences from (meta)genomic data☆260Updated 7 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆325Updated last year
- Bacterial ribosomal RNA predictor☆247Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆416Updated 5 months ago
- ☆256Updated last year