metagenome-atlas / atlasLinks
ATLAS - Three commands to start analyzing your metagenome data
☆400Updated last month
Alternatives and similar repositories for atlas
Users that are interested in atlas are comparing it to the libraries listed below
Sorting:
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆399Updated last week
- A complete pipeline for metagenomic analysis☆440Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆362Updated last month
- A flexible pipeline for complete analysis of bacterial genomes☆492Updated last week
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆253Updated last year
- Rapid large-scale prokaryote pan genome analysis☆364Updated last month
- Rapid comparison and dereplication of genomes☆324Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆452Updated 7 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆361Updated 4 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆331Updated 10 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆387Updated 2 weeks ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆282Updated 4 months ago
- Fast Whole-Genome Similarity (ANI) Estimation☆445Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated last week
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆229Updated 3 weeks ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆582Updated 3 weeks ago
- Bacterial ribosomal RNA predictor☆266Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago
- bioBakery tools for meta'omic profiling☆299Updated 6 months ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- Assembly and binning of metagenomes☆265Updated 3 weeks ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆308Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Gene cluster comparison figure generator☆627Updated last week
- Genome annotation with AUGUSTUS☆322Updated 4 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆372Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆399Updated 6 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆298Updated 8 months ago