metagenome-atlas / atlasLinks
ATLAS - Three commands to start analyzing your metagenome data
☆395Updated 3 months ago
Alternatives and similar repositories for atlas
Users that are interested in atlas are comparing it to the libraries listed below
Sorting:
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆380Updated 3 weeks ago
- A complete pipeline for metagenomic analysis☆424Updated last week
- Eukaryotic Genome Annotation Pipeline☆361Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆544Updated last month
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆431Updated 3 months ago
- A flexible pipeline for complete analysis of bacterial genomes☆468Updated last week
- NCBI Prokaryotic Genome Annotation Pipeline☆353Updated this week
- Gene cluster comparison figure generator☆606Updated 9 months ago
- An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within micro…☆247Updated last year
- Rapid large-scale prokaryote pan genome analysis☆354Updated 3 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆208Updated last year
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆381Updated 2 months ago
- Fast taxonomic classification of metagenomic sequencing reads using a protein reference database☆290Updated 4 months ago
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆318Updated 6 months ago
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆350Updated 3 weeks ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆438Updated 2 years ago
- Genome assembly evaluation tool☆458Updated 9 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆293Updated this week
- Rapid comparison and dereplication of genomes☆307Updated 2 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆422Updated 7 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆361Updated 2 months ago
- Genome annotation with AUGUSTUS☆315Updated 2 weeks ago
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆538Updated 3 weeks ago
- bioBakery tools for meta'omic profiling☆285Updated 2 months ago
- Bacterial ribosomal RNA predictor☆252Updated last year
- IQ-TREE software version 2: phylogenetics by maximum likelihood☆300Updated 4 months ago
- Build a partitioned pangenome graph from microbial genomes☆276Updated this week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆429Updated 8 months ago
- Mass screening of contigs for antimicrobial and virulence genes☆434Updated last year