Woltka: a versatile meta'omic data classifier
β81Sep 8, 2025Updated last year
Alternatives and similar repositories for woltka
Users that are interested in woltka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and scalable phylogenetic tree viewer for microbiome data analysisβ56Aug 4, 2024Updated 2 years ago
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)β119Sep 9, 2026Updated 2 weeks ago
- Bayesian Inferential Regression for Differential Microbiome Analysisβ25Jun 5, 2026Updated 3 months ago
- A taxonomic classifier for shotgun metagenomics readsβ11Aug 26, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bioinformatics program inStrainβ193Mar 12, 2026Updated 6 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomesβ77Aug 13, 2026Updated last month
- Automated taxonomy decoration onto a treeβ19Jul 16, 2026Updated 2 months ago
- Case-control matching for microbiome dataβ10Aug 8, 2023Updated 3 years ago
- CAMISIM: Simulating metagenomes and microbial communitiesβ234Jul 16, 2026Updated 2 months ago
- β15Aug 6, 2020Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomesβ342Updated this week
- Identifying misassemblies via deep learningβ11May 1, 2024Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisationβ45May 2, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.β155Updated this week
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagβ¦β106Jul 14, 2026Updated 2 months ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.β55Sep 18, 2026Updated last week
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assembliesβ153Sep 8, 2026Updated 2 weeks ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomesβ195Sep 8, 2026Updated 2 weeks ago
- β43Feb 14, 2021Updated 5 years ago
- frame-shift correction for long-read (meta)genomicsβ33Dec 11, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Jan 29, 2023Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- β16Jun 2, 2021Updated 5 years ago
- β16Apr 10, 2023Updated 3 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomesβ10Apr 4, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2β24Dec 11, 2024Updated last year
- MaAsLin2: Microbiome Multivariate Association with Linear Modelsβ154Feb 5, 2026Updated 7 months ago
- β43Oct 10, 2025Updated 11 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β42Sep 16, 2026Updated last week
- motus - a tool for marker gene-based OTU (mOTU) profilingβ187Jul 17, 2026Updated 2 months ago
- Vanilla regression methods for microbiome differential abundance analysisβ62Nov 3, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient β’ AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Read alignment statistics for metagenomicsβ407Updated this week
- SemiBin: metagenomics binning with self-supervised deep learningβ175Sep 20, 2026Updated last week
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search forβ¦β169Apr 23, 2025Updated last year
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.β95Aug 13, 2024Updated 2 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.β264May 13, 2026Updated 4 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence dataβ61Sep 23, 2025Updated last year
- tree visualization for tree + annotation dataβ65Jun 17, 2025Updated last year