Woltka: a versatile meta'omic data classifier
☆80Sep 8, 2025Updated last year
Alternatives and similar repositories for woltka
Users that are interested in woltka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 7, 2026Updated last week
- Bayesian Inferential Regression for Differential Microbiome Analysis☆25Jun 5, 2026Updated 4 months ago
- Bioinformatics program inStrain☆192Oct 9, 2026Updated last week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated last month
- CAMISIM: Simulating metagenomes and microbial communities☆233Jul 16, 2026Updated 3 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆77Aug 13, 2026Updated 2 months ago
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 3 years ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆196Sep 8, 2026Updated last month
- Automated taxonomy decoration onto a tree☆19Jul 16, 2026Updated 3 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- ☆15Aug 6, 2020Updated 6 years ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 5 months ago
- Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.☆155Sep 29, 2026Updated 2 weeks ago
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆56Sep 28, 2026Updated 2 weeks ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- ☆43Feb 14, 2021Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆16Apr 10, 2023Updated 3 years ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- ☆16Jun 2, 2021Updated 5 years ago
- Pipeline for analyzing rare mutations in metagenome-assembled genomes☆10Apr 4, 2025Updated last year
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- motus - a tool for marker gene-based OTU (mOTU) profiling☆187Jul 17, 2026Updated 3 months ago
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆153Feb 5, 2026Updated 8 months ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Updated this week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆43Oct 8, 2026Updated last week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- tree visualization for tree + annotation data☆69Jun 17, 2025Updated last year
- ☆43Oct 10, 2025Updated last year
- Vanilla regression methods for microbiome differential abundance analysis☆61Nov 3, 2020Updated 5 years ago
- Read alignment statistics for metagenomics☆408Updated this week
- MuDoGeR makes the recovery of genomes from prokaryotes, viruses, and eukaryotes from metagenomes easy.☆95Aug 13, 2024Updated 2 years ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆170Apr 23, 2025Updated last year
- Fast average nucleotide identity (ANI) calculator for bacterial genomes, MAGs, and contigs. Supports genome comparisons and large-scale d…☆267Updated this week