Woltka: a versatile meta'omic data classifier
☆80Sep 8, 2025Updated last year
Alternatives and similar repositories for woltka
Users that are interested in woltka are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆56Aug 4, 2024Updated 2 years ago
- Dadaist2 🟨 Highway to R☆13Mar 7, 2025Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆108Oct 19, 2026Updated 2 weeks ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆26Jun 5, 2026Updated 5 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆344Oct 29, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆199Updated this week
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 29, 2026Updated last week
- Bioinformatics program inStrain☆193Oct 20, 2026Updated 2 weeks ago
- CAMISIM: Simulating metagenomes and microbial communities☆234Jul 16, 2026Updated 3 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- motus - a tool for marker gene-based OTU (mOTU) profiling☆188Jul 17, 2026Updated 3 months ago
- ☆16Jun 2, 2021Updated 5 years ago
- A complete pipeline for metagenomic analysis☆457Aug 28, 2026Updated 2 months ago
- ☆15Aug 6, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Case-control matching for microbiome data☆10Aug 8, 2023Updated 3 years ago
- Automated taxonomy decoration onto a tree☆19Jul 16, 2026Updated 3 months ago
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆153Sep 8, 2026Updated last month
- Assessing the quality of metagenome-derived genome bins using machine learning☆283Mar 20, 2025Updated last year
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆58Sep 28, 2026Updated last month
- Variational autoencoder for metagenomic binning☆335Apr 27, 2026Updated 6 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆78Aug 13, 2026Updated 2 months ago
- DAS Tool☆178Oct 9, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- Read alignment statistics for metagenomics☆411Updated this week
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆45Updated this week
- MaAsLin2: Microbiome Multivariate Association with Linear Models☆158Feb 5, 2026Updated 9 months ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated 2 months ago
- ☆16Apr 10, 2023Updated 3 years ago
- Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TE…☆93Jul 13, 2026Updated 3 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆187Oct 18, 2026Updated 2 weeks ago
- Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on h…☆436Oct 17, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.☆209Jun 10, 2026Updated 4 months ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆17Nov 24, 2025Updated 11 months ago
- Pipeline for metabolic annotation of microbial genomes☆154Mar 20, 2025Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆119Updated this week
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Jun 14, 2025Updated last year
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 13, 2026Updated 3 weeks ago