qiyunzhu / woltkaLinks
Woltka: a versatile meta'omic data classifier
☆74Updated 2 months ago
Alternatives and similar repositories for woltka
Users that are interested in woltka are comparing it to the libraries listed below
Sorting:
- Convert GTDB taxonomy to NCBI taxdump format☆71Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 11 months ago
- ☆82Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- viralVerify: viral contig verification tool☆69Updated 3 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆54Updated 3 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- ARG normalization by mapping to the ARO ontology.☆57Updated last month
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 7 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆74Updated 2 years ago
- ☆71Updated last month
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Follow up to Grace Blackwell's 661k dataset, for 2023☆105Updated 2 weeks ago
- Microbiome classification pipeline☆66Updated 3 weeks ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated 2 weeks ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆60Updated 4 years ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆85Updated last week
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Statistical analysis for sparse high-throughput sequencing☆69Updated 5 months ago
- Bioinformatics program inStrain☆171Updated 3 weeks ago
- MGnify genome analysis pipeline☆106Updated last week
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Bash pipeline for analysis of ONT full-length 16S sequences in QIIME2☆30Updated 5 years ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆49Updated last year