qiyunzhu / woltka
Woltka: a versatile meta'omic data classifier
☆71Updated 3 months ago
Alternatives and similar repositories for woltka:
Users that are interested in woltka are comparing it to the libraries listed below
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆70Updated last year
- Convert GTDB taxonomy to NCBI taxdump format☆67Updated last year
- scripts for estimating bacteria replication rates based on population genome copy number variation☆70Updated 5 years ago
- Bioinformatics tool to find integrons in bacterial genomes☆68Updated 7 months ago
- CLI tool to annotate genes with KOfam☆73Updated last year
- A tool for drawing ANI clustermap between all-vs-all microbial genomes☆71Updated 4 months ago
- Statistical analysis for sparse high-throughput sequencing☆69Updated last month
- GTDB taxonomy taxdump files with trackable TaxIds☆51Updated 8 months ago
- viralVerify: viral contig verification tool☆66Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated 9 months ago
- Metagenomic classification of long-read sequencing data☆69Updated last month
- ☆41Updated last month
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- DDBJ Fast Annotation and Submission Tool☆78Updated 3 weeks ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆57Updated 5 years ago
- Microbiome classification pipeline☆64Updated 9 months ago
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆82Updated this week
- A toolbox for comparative genomics.☆99Updated 3 years ago
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆69Updated 7 months ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- Bioinformatics program inStrain☆155Updated 8 months ago
- MGnify genome analysis pipeline☆104Updated this week
- a collection of scripts for organising bacterial genomes by species☆76Updated 2 years ago
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆50Updated 2 years ago
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆27Updated last year
- ☆79Updated last year
- Similarity networks of biosynthetic gene clusters☆91Updated this week
- Sparse Cooccurence Network Investigation for Compositional data☆24Updated 2 months ago
- PHANOTATE: a tool to annotate phage genomes.☆71Updated last month