CAMI-challenge / CAMITAXLinks
CAMITAX: Taxon labels for microbial genomes
☆30Updated last year
Alternatives and similar repositories for CAMITAX
Users that are interested in CAMITAX are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- software to identify primers that can distinguish genomes☆20Updated 7 months ago
- De novo VIral Genome Annotator☆23Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 9 months ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated 2 months ago
- transposable element typing pipeline☆19Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆19Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 3 weeks ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Read contamination removal☆25Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆41Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- Neptune: Genomic Signature Discovery☆20Updated 9 months ago
- Raspir, the rare species identifier☆11Updated last year
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Prokaryotic Pangenome Analysis☆24Updated 3 years ago