CAMI-challenge / CAMITAX
CAMITAX: Taxon labels for microbial genomes
☆29Updated last year
Alternatives and similar repositories for CAMITAX:
Users that are interested in CAMITAX are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- ☆22Updated 2 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 3 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆30Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- strain-level analysis tools☆36Updated 6 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 5 months ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 weeks ago
- Find Unique genomic Regions☆29Updated last month
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Annotate your metagenome assemblies☆11Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Detect contigs of complete circular genomes☆23Updated 5 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 7 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- TAXnomic Profile Aggregation and STAndardisation☆39Updated 6 months ago