CAMI-challenge / CAMITAX
CAMITAX: Taxon labels for microbial genomes
☆29Updated last year
Alternatives and similar repositories for CAMITAX:
Users that are interested in CAMITAX are comparing it to the libraries listed below
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- De novo VIral Genome Annotator☆21Updated 5 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- software to identify primers that can distinguish genomes☆21Updated 3 weeks ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- ☆22Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆20Updated 3 months ago
- Find Unique genomic Regions☆29Updated last month
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated 2 months ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated 11 months ago
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 3 weeks ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- A healthy human gut genome collection☆22Updated last year
- Utility program for extracting sequences from a fasta/fastq file☆36Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆21Updated this week
- Python package for common tasks in bioinformatic.☆13Updated last year
- ☆23Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago