CAMI-challenge / CAMITAXLinks
CAMITAX: Taxon labels for microbial genomes
☆30Updated last year
Alternatives and similar repositories for CAMITAX
Users that are interested in CAMITAX are comparing it to the libraries listed below
Sorting:
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- De novo VIral Genome Annotator☆23Updated 11 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 8 months ago
- transposable element typing pipeline☆18Updated last year
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 8 months ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆45Updated last month
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆34Updated last year
- software to identify primers that can distinguish genomes☆21Updated 7 months ago
- ☆17Updated last year
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated last week
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆19Updated 6 months ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Read contamination removal☆25Updated last year
- Neptune: Genomic Signature Discovery☆20Updated 9 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- strain-level analysis tools☆39Updated 10 months ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated 3 weeks ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year