CAMITAX: Taxon labels for microbial genomes
☆31Dec 14, 2023Updated 2 years ago
Alternatives and similar repositories for CAMITAX
Users that are interested in CAMITAX are comparing it to the libraries listed below
Sorting:
- Histosketching Using Little Kmers☆57May 25, 2023Updated 2 years ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 8 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 8 months ago
- Mapping NCBI Genbank accession to GTDB accession☆14Feb 13, 2021Updated 5 years ago
- Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).☆13Apr 20, 2021Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 6 months ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- An efficient index for the colored, compacted, de Bruijn graph☆111Mar 11, 2026Updated last week
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆11Updated this week
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Bonsai: Fast, flexible taxonomic analysis and classification☆70Apr 9, 2024Updated last year
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 2 years ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆208Sep 22, 2023Updated 2 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 7 years ago
- Rapid determination of appropriate reference genomes.☆100Jan 22, 2025Updated last year
- Snakemake pipeline for simulating shotgun metagenomic samples☆29Mar 13, 2026Updated last week
- strain-level analysis tools☆39Oct 21, 2024Updated last year
- Get microbial sequence data easier and faster☆28Nov 7, 2019Updated 6 years ago
- a collection of scripts for organising bacterial genomes by species☆81Mar 18, 2022Updated 4 years ago
- Phage-Host Interaction Search Tool☆29Jul 8, 2024Updated last year
- Rust in bioinformatics and computational biology☆19Oct 22, 2022Updated 3 years ago
- ☆84Sep 13, 2023Updated 2 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆86Mar 7, 2024Updated 2 years ago
- CAMISIM: Simulating metagenomes and microbial communities☆222Feb 18, 2026Updated last month
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 6 years ago
- More scalable dereplication for metagenome assembled genomes☆78Mar 8, 2026Updated last week
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Feb 6, 2023Updated 3 years ago
- Hydrocarbon biodegradation gene annotation☆19Jul 14, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆48Feb 5, 2026Updated last month
- ☆20Sep 4, 2024Updated last year
- Build sourmash databases for genbank.☆11May 4, 2023Updated 2 years ago
- Simulate mutations in genomes☆15Jun 15, 2020Updated 5 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆124Aug 24, 2023Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆54Sep 7, 2025Updated 6 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆104Jan 27, 2026Updated last month