kbseah / genome-bin-tools
Interactive tools for metagenome visualization and binning in R
☆28Updated 6 years ago
Alternatives and similar repositories for genome-bin-tools:
Users that are interested in genome-bin-tools are comparing it to the libraries listed below
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Tools for extracting individual genomes from metagenomes☆17Updated last year
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- ☆22Updated last year
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Updated 2 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 7 years ago
- Strain Prediction and Analysis with Representative SEquence☆18Updated last month
- Detect contigs of complete circular genomes☆22Updated 5 years ago
- Metagenomic binning suite☆29Updated 2 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- A set of scripts for calculating pairwise SNP distance☆38Updated 2 years ago
- ☆23Updated 6 years ago
- Estimate metagenomic coverage and sequence diversity☆47Updated 5 months ago
- Strain Resolution ON Graphs☆47Updated last year
- AMPtk: Amplicon ToolKit for NGS data (formally UFITS)☆38Updated last year
- Repository of our application for human-augmented binning☆27Updated 3 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 3 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 4 months ago
- MAG Circularization Method☆33Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- A repository with scripts to run pipeline that are commonly used in the Meren Lab☆11Updated 6 years ago