Interactive tools for metagenome visualization and binning in R
☆27Jun 28, 2018Updated 7 years ago
Alternatives and similar repositories for genome-bin-tools
Users that are interested in genome-bin-tools are comparing it to the libraries listed below
Sorting:
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Jan 30, 2016Updated 10 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 4 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31May 25, 2021Updated 4 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- Improving genome bins through the combination of different binning programs☆31Jan 30, 2023Updated 3 years ago
- Homebrew tap for formulae to build ARB (http://www.arb-home.de) and related software.☆13Mar 22, 2025Updated 11 months ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated last year
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated 7 months ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Aug 9, 2025Updated 6 months ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Nov 18, 2018Updated 7 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Aug 18, 2017Updated 8 years ago
- Scripts required to calculate tetramer frequencies and create input files for ESOM. See: Dick, G.J., A. Andersson, B.J. Baker, S.S. Simmo…☆17Feb 17, 2022Updated 4 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆14Dec 18, 2021Updated 4 years ago
- A toolbox for improving metagenome-assembled genomes.☆64Jun 2, 2021Updated 4 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆211Aug 21, 2024Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆89Oct 27, 2023Updated 2 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 8 years ago
- Utility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin☆15Sep 24, 2024Updated last year
- Metagenomic binning suite☆29Sep 30, 2022Updated 3 years ago
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆65Aug 12, 2019Updated 6 years ago
- StriDe Assembler☆25Nov 23, 2017Updated 8 years ago
- Scripts and tutorials on how to assemble individual microbial genomes from metagenomes☆80Jun 14, 2016Updated 9 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- MAG Circularization Method☆32Nov 4, 2025Updated 4 months ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 7 years ago
- micca - MICrobial Community Analysis☆19Feb 12, 2020Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Apr 21, 2021Updated 4 years ago
- Confirming specific taxonomic groups within your samples.☆19Dec 21, 2020Updated 5 years ago
- Git mirror of Bioconductor SRAdb package☆23Feb 20, 2018Updated 8 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Dec 8, 2024Updated last year
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Jul 3, 2021Updated 4 years ago
- This RAPT repository has been retired as of December 2024. NCBI's Read assembly and Annotation Pipeline Tool (RAPT) was a pilot service.☆58Apr 1, 2025Updated 11 months ago
- NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data☆38Feb 2, 2022Updated 4 years ago