eclarke / komplexityLinks
A method of assessing sequence complexity based on kmer frequencies
☆33Updated 7 years ago
Alternatives and similar repositories for komplexity
Users that are interested in komplexity are comparing it to the libraries listed below
Sorting:
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Find Unique genomic Regions☆30Updated last week
- ☆29Updated 4 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Influenza genome analysis Nextflow workflow☆23Updated last month
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Convert genbank files to a swath of other formats☆22Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- ☆45Updated 2 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- ☆31Updated last year
- Remove human reads from a sequencing run☆40Updated 3 months ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- Read contamination removal☆25Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Code for nanopore paper☆33Updated 10 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆24Updated 2 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago