eclarke / komplexity
A method of assessing sequence complexity based on kmer frequencies
β31Updated 6 years ago
Alternatives and similar repositories for komplexity:
Users that are interested in komplexity are comparing it to the libraries listed below
- TAXnomic Profile Aggregation and STAndardisationβ35Updated 3 months ago
- Output FASTQ summary statistics in JSON formatβ29Updated 2 years ago
- π π« Trim, circularise and orient long read bacterial genome assembliesβ26Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes databaseβ40Updated 4 years ago
- π¬π Rapid 16s rRNA identification from isolate FASTQ filesβ23Updated 6 years ago
- Assembly based core genome SNP alignments for bacteriaβ25Updated 5 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphsβ25Updated 2 years ago
- Find Unique genomic Regionsβ29Updated last month
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annβ¦β25Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.β50Updated 7 months ago
- strain-level analysis toolsβ34Updated 3 months ago
- Get microbial sequence data easier and fasterβ28Updated 5 years ago
- Toolkit for establishing, updating, and validating GTDB species clustersβ20Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.β37Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.β19Updated 3 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)β24Updated 4 months ago
- Split Kmer Analysisβ63Updated 2 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshopβ18Updated 9 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasetsβ28Updated 7 months ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encodingβ23Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strainsβ45Updated 2 years ago
- Fast and space-efficient taxonomic classification of long readsβ43Updated 3 months ago
- Phylogeny Enhanded Prediction of PAN-genomeβ40Updated 4 years ago
- R markdown documents copied from other folders on Dec 15th 2021β14Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing readsβ25Updated 2 years ago
- Set of utilities on sequences and BAM filesβ26Updated 3 years ago
- reference-based long read assemblies of bacterial genomesβ47Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigsβ27Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequencesβ60Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS readsβ21Updated last year