eclarke / komplexityLinks
A method of assessing sequence complexity based on kmer frequencies
☆33Updated 7 years ago
Alternatives and similar repositories for komplexity
Users that are interested in komplexity are comparing it to the libraries listed below
Sorting:
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- Find Unique genomic Regions☆32Updated 3 weeks ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆44Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated last week
- ☆31Updated last year
- Flexible circular visualization of genome-associated data with BioPerl and SVG.☆47Updated 6 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 3 years ago
- Read contamination removal☆25Updated last year
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆25Updated 6 years ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆56Updated 7 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- transposable element typing pipeline☆19Updated last year
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 weeks ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆19Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 8 months ago
- ☆44Updated 4 years ago