Alternatives and similar repositories for Minimac4

Users that are interested in Minimac4 are comparing it to the libraries listed below

• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆88Updated 2 months ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆82Updated last year
• poruloh / Eagle
  Haplotype phasing software
  ☆67Updated 4 years ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆160Updated 2 months ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆125Updated 2 months ago
• bvilhjal / ldpred
  ☆100Updated 3 years ago
• WGLab / PennCNV
  Copy number vaiation detection from SNP arrays
  ☆96Updated last year
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆137Updated last year
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆67Updated 7 months ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆107Updated 4 years ago
• konradjk / loftee
  ☆183Updated 2 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆116Updated last year
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆140Updated 2 months ago
• AstraZeneca-NGS / reference_data
  Reference data: BED files, genes, transcripts, variations.
  ☆88Updated 7 years ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆72Updated 4 years ago
• zhou-lab / biscuit
  BISulfite-seq CUI Toolkit
  ☆68Updated 3 weeks ago
• PMBio / peer
  A factor analysis package
  ☆102Updated 13 years ago
• armartin / ancestry_pipeline
  Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
  ☆112Updated 4 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆89Updated 3 years ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆154Updated 2 years ago
• CCDG / Pipeline-Standardization
  ☆82Updated 6 years ago
• statgen / EPACTS
  ☆37Updated 3 years ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆84Updated last month
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆172Updated last year
• statgen / locuszoom
  A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
  ☆162Updated 5 months ago
• Wedge-lab / battenberg
  Battenberg R package for subclonal copynumber estimation
  ☆91Updated 3 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆56Updated last month
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆92Updated 2 years ago
• Oshlack / JAFFA
  JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions
  ☆101Updated 4 months ago