Alternatives and similar repositories for Minimac4:

Users that are interested in Minimac4 are comparing it to the libraries listed below

• poruloh / Eagle
  Haplotype phasing software
  ☆65Updated 4 years ago
• bvilhjal / ldpred
  ☆97Updated 2 years ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆80Updated 6 months ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆84Updated last month
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆147Updated last month
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆115Updated 6 months ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆127Updated 3 weeks ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆137Updated 3 years ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆63Updated last week
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆45Updated 3 weeks ago
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆70Updated last month
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆112Updated 8 months ago
• Santy-8128 / Minimac3
  Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…
  ☆29Updated 3 years ago
• konradjk / loftee
  ☆174Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆78Updated 4 months ago
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆109Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆105Updated 3 months ago
• StatFunGen / xqtl-protocol
  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
  ☆43Updated this week
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 5 months ago
• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆82Updated 2 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆76Updated 7 months ago
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆72Updated last week
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆129Updated 9 months ago
• limix / limix
  Linear mixed model for genomic analyses.
  ☆104Updated 3 years ago
• h3abionet / h3agwas
  GWAS Pipeline for H3Africa
  ☆108Updated last week
• genepi-freiburg / gwas
  Scripts for GWAS association and metaanalysis
  ☆43Updated 4 years ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆144Updated 2 weeks ago
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago