Alternatives and similar repositories for Minimac4:

Users that are interested in Minimac4 are comparing it to the libraries listed below

• poruloh / Eagle
  Haplotype phasing software
  ☆66Updated 4 years ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆85Updated 2 months ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆80Updated 6 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆139Updated 3 years ago
• bvilhjal / ldpred
  ☆97Updated 2 years ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆118Updated 6 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆81Updated 2 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆149Updated 2 months ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆130Updated 9 months ago
• Santy-8128 / Minimac3
  Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…
  ☆29Updated 3 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆112Updated 9 months ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆70Updated 4 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆46Updated last week
• weizhouUMICH / SAIGE
  ☆193Updated 2 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆77Updated 7 months ago
• mkanai / fujiplot
  Fuji plot—a circos representation of multiple GWAS results—
  ☆83Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆128Updated this week
• neurogenetics / GWAS-pipeline
  This is a general (somewhat comprehensive) description of the LNG GWAS pipeline which can be used to guide researchers on how-to run a GW…
  ☆41Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆107Updated 4 months ago
• VanLoo-lab / ascat
  ASCAT R package
  ☆179Updated 3 weeks ago
• konradjk / loftee
  ☆176Updated last year
• sbslee / pypgx
  A Python package for pharmacogenomics (PGx) research
  ☆70Updated 2 months ago
• Ensembl / VEP_plugins
  Plugins for the Ensembl Variant Effect Predictor (VEP)
  ☆144Updated this week
• limix / limix
  Linear mixed model for genomic analyses.
  ☆104Updated 3 years ago
• PMBio / peer
  A factor analysis package
  ☆100Updated 12 years ago
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆79Updated 4 months ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆159Updated 7 months ago
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆48Updated 2 months ago
• atgu / ukbb_pan_ancestry
  Analyses conducting GWAS across the UKBB diverse superpopulations
  ☆50Updated 6 months ago