Alternatives and similar repositories for Minimac4

Users that are interested in Minimac4 are comparing it to the libraries listed below

• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆89Updated 4 months ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆141Updated 3 years ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆83Updated last year
• bvilhjal / ldpred
  ☆102Updated 3 years ago
• freeseek / gtc2vcf
  Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
  ☆162Updated 4 months ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆110Updated 4 years ago
• poruloh / Eagle
  Haplotype phasing software
  ☆69Updated 5 years ago
• parklab / NGSCheckMate
  Software program for checking sample matching for NGS data
  ☆137Updated last year
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆129Updated 4 months ago
• konradjk / loftee
  ☆187Updated 2 years ago
• mskcc / facets
  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
  ☆157Updated 2 years ago
• WGLab / PennCNV
  Copy number vaiation detection from SNP arrays
  ☆96Updated last year
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆72Updated 5 years ago
• AstraZeneca-NGS / reference_data
  Reference data: BED files, genes, transcripts, variations.
  ☆88Updated 8 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆117Updated last year
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆90Updated 2 months ago
• griffithlab / regtools
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
  ☆135Updated last year
• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• lima1 / PureCN
  Copy number calling and variant classification using targeted short read sequencing
  ☆141Updated 4 months ago
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆154Updated 3 weeks ago
• zhou-lab / biscuit
  BISulfite-seq CUI Toolkit
  ☆69Updated 3 months ago
• eQTL-Catalogue / qtlmap
  Portable eQTL analysis and statistical fine mapping workflow used by the eQTL Catalogue
  ☆57Updated 3 months ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆69Updated 9 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆226Updated last year
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆120Updated last month
• lukfor / pgs-calc
  Applying polygenic scores (PGS) on imputed genotypes
  ☆31Updated 2 months ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆175Updated last year
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆86Updated last month
• leelabsg / SKAT
  Sequence kernel association test (SKAT)
  ☆54Updated 5 months ago
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆91Updated 3 years ago