rohan-shah / mpMap2

Related projects ⓘ

Alternatives and complementary repositories for mpMap2

• dorolin / rearrvisr
  An R package to detect, classify, and visualize genome rearrangements
  ☆15Updated 4 years ago
• augusto-garcia / fullsibQTL
  QTL mapping in outcrossing species using CIM
  ☆9Updated 10 months ago
• pblischak / polyploid-genotyping
  SNP genotyping in polyploids
  ☆15Updated 4 years ago
• YTLogos / ttplot
  Tao Yan's Plot Toolkit
  ☆11Updated 5 years ago
• yhg926 / TQSLE
  TQSLE v1.0 released
  ☆10Updated last year
• hlilab / hlilab.github.io
  ☆15Updated 2 months ago
• xhhuanglab / QTN_scripts
  ☆9Updated 3 years ago
• signaturescience / skater
  SKATE R Utilities
  ☆9Updated 5 months ago
• Rosemeis / emu
  EM-PCA for Ultra-low Coverage Sequencing Data
  ☆16Updated last week
• AppliedBioinformatics / Brassica_oleracea_rapa_napus_code
  Code for the Brassica oleracea/rapa/napus genomic comparison
  ☆16Updated 3 years ago
• xuzhougeng / binmapr
  R package for binmap
  ☆12Updated last year
• pdimens / LepWrap
  A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
  ☆10Updated 8 months ago
• lvclark / polyRAD
  Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝
  ☆27Updated 11 months ago
• bhofmei / bhofmei-jbplugins
  All JBrowse plugins created by Brigitte Hofmeister
  ☆10Updated 6 years ago
• SouthGreenPlatform / PyRice
  PyRice is an API to access some Rice public databases at the same time with consistent output. PyRice design is modular and implements a …
  ☆11Updated last year
• mskilab-org / pgv
  Pan gGnome Viewer
  ☆10Updated 9 months ago
• schneebergerlab / GameteBinning_tetraploid
  This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings
  ☆11Updated 3 years ago
• sunnyeesl / BigLD
  ☆21Updated 2 years ago
• YaoLab-Bioinfo / LIRBase
  A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
  ☆16Updated 3 years ago
• frahik / BMTME
  Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
  ☆17Updated last year
• guokai8 / EnrichR
  Functional Enrichment Analysis and Network Construction
  ☆9Updated 4 years ago
• ComparativeGenomicsToolkit / mafTools
  Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.
  ☆10Updated last week
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• qm2 / gpress
  This is the GPress, a framework for querying GTF, GFF3 and expression files in a compressed form.
  ☆12Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 6 months ago
• eblerjana / whatshap-polyphase-experiments
  ☆9Updated 4 years ago
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆11Updated this week
• GonzalezLab / T-lex3
  ☆14Updated 4 years ago
• jokergoo / gtrellis
  Genomic plot in trellis layout
  ☆39Updated 8 months ago
• StoreyLab / bnpsd
  R package to model and simulate admixed populations
  ☆8Updated last year