Alternatives and similar repositories for ldsc

Users that are interested in ldsc are comparing it to the libraries listed below

• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆376Updated 2 years ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆949Updated 2 years ago
• MRCIEU / TwoSampleMR
  R package for performing 2-sample MR using IEU OpenGWAS database
  ☆519Updated 3 weeks ago
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆347Updated last month
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆200Updated 2 years ago
• YinLiLin / CMplot
  📊 Circular and Rectangular Manhattan Plot
  ☆603Updated 7 months ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆260Updated last week
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆200Updated last year
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆193Updated last year
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆675Updated 3 years ago
• YuLab-SMU / clusterProfiler
  A universal enrichment tool for interpreting omics data
  ☆1,140Updated this week
• chrchang / plink-ng
  PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…
  ☆473Updated this week
• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆388Updated 2 months ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆871Updated last month
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆479Updated 4 months ago
• hbctraining / DGE_workshop
  ☆401Updated 3 years ago
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆646Updated last week
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆442Updated 5 years ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆340Updated 2 months ago
• hbctraining / scRNA-seq
  ☆588Updated 4 years ago
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆252Updated last week
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆830Updated last year
• hbctraining / Intro-to-scRNAseq
  ☆635Updated 7 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆316Updated 2 years ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆183Updated 3 months ago
• dnanexus / UKB_RAP
  Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DN…
  ☆208Updated last year
• GreenleafLab / ArchR
  ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)
  ☆436Updated 9 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆419Updated last week
• omnideconv / immunedeconv
  A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…
  ☆511Updated 2 weeks ago