Alternatives and similar repositories for ldsc

Users that are interested in ldsc are comparing it to the libraries listed below

• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆364Updated 2 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆188Updated last year
• Cloufield / GWASTutorial
  GWAS Tutorial for Beginners
  ☆288Updated 3 weeks ago
• MareesAT / GWA_tutorial
  A comprehensive tutorial about GWAS and PRS
  ☆910Updated 2 years ago
• YinLiLin / CMplot
  📊 Circular and Rectangular Manhattan Plot
  ☆577Updated 2 months ago
• MRCIEU / TwoSampleMR
  R package for performing 2-sample MR using MR-Base database
  ☆495Updated last week
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆219Updated this week
• hemberg-lab / scRNA.seq.course
  Analysis of single cell RNA-seq data course
  ☆676Updated 3 years ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago
• hbctraining / DGE_workshop
  ☆393Updated 3 years ago
• broadinstitute / gtex-pipeline
  GTEx & TOPMed data production and analysis pipelines
  ☆372Updated 3 weeks ago
• mikelove / awesome-multi-omics
  List of software packages for multi-omics analysis
  ☆812Updated 2 months ago
• twbattaglia / RNAseq-workflow
  A repository for setting up a RNAseq workflow
  ☆431Updated 8 years ago
• hbctraining / scRNA-seq
  ☆567Updated 4 years ago
• hbctraining / In-depth-NGS-Data-Analysis-Course
  ☆443Updated 5 years ago
• FelixKrueger / Bismark
  A tool to map bisulfite converted sequence reads and determine cytosine methylation states
  ☆424Updated 2 months ago
• Teichlab / scg_lib_structs
  Collections of library structure and sequence of popular single cell genomic methods
  ☆468Updated last month
• crazyhottommy / ChIP-seq-analysis
  ChIP-seq analysis notes from Ming Tang
  ☆807Updated 10 months ago
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆234Updated 2 weeks ago
• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• PoisonAlien / maftools
  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
  ☆466Updated 2 months ago
• getian107 / PRScs
  Polygenic prediction via continuous shrinkage priors
  ☆179Updated 7 months ago
• hbctraining / Intro-to-ChIPseq
  Intro to ChIPseq using HPC
  ☆308Updated 2 years ago
• hbctraining / Training-modules
  Materials for short, half-day workshops
  ☆334Updated last month
• broadinstitute / infercnv
  Inferring CNV from Single-Cell RNA-Seq
  ☆621Updated 4 months ago
• thelovelab / DESeq2
  Differential expression of RNA-seq data using the Negative Binomial
  ☆394Updated 3 weeks ago
• macs3-project / MACS
  MACS -- Model-based Analysis of ChIP-Seq
  ☆746Updated 2 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• hbctraining / Intro-to-scRNAseq
  ☆601Updated 2 months ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆181Updated 10 months ago