poruloh / Eagle

Related projects ⓘ

Alternatives and complementary repositories for Eagle

• slowkoni / rfmix
  RFMIX - Local Ancestry and Admixture Inference Version 2
  ☆77Updated last year
• statgen / Minimac4
  ☆56Updated 11 months ago
• Santy-8128 / Minimac3
  Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…
  ☆28Updated 2 years ago
• secastel / phaser
  phasing and Allele Specific Expression from RNA-seq
  ☆111Updated 3 months ago
• freeseek / gwaspipeline
  ☆40Updated 6 years ago
• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆70Updated 2 months ago
• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆70Updated 2 years ago
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆137Updated 5 months ago
• arq5x / bedtools-protocols
  ☆78Updated 10 years ago
• cancerit / cgpBattenberg
  Battenberg algorithm and associated implementation script
  ☆51Updated 4 years ago
• bmvdgeijn / WASP
  WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery
  ☆103Updated 3 years ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 5 years ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆54Updated 10 months ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆74Updated 3 weeks ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆48Updated 5 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 5 years ago
• Illumina / akt
  Ancestry and Kinship Tools
  ☆69Updated last year
• svviz / svviz
  Read visualizer for structural variants
  ☆81Updated 6 years ago
• lh3 / CHM-eval
  ☆52Updated 4 years ago
• CshlSiepelLab / LINSIGHT
  ☆24Updated 5 months ago
• lh3 / fermikit
  De novo assembly based variant calling pipeline for Illumina short reads
  ☆107Updated 3 years ago
• mozack / abra2
  ABRA2
  ☆90Updated last year
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated 8 months ago
• xihaoli / STAARpipeline
  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
  ☆61Updated 2 weeks ago
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆104Updated last month
• nygenome / lancet
  Microassembly based somatic variant caller for NGS data
  ☆154Updated 2 years ago
• brentp / duphold
  don't get DUP'ed or DEL'ed by your putative SVs.
  ☆101Updated 3 years ago
• freeseek / mocha
  MOsaic CHromosomal Alterations (MoChA) caller
  ☆81Updated last month
• GooglingTheCancerGenome / sv-callers
  Snakemake-based workflow for detecting structural variants in genomic data
  ☆77Updated 8 months ago