poruloh / EagleLinks
Haplotype phasing software
☆67Updated 4 years ago
Alternatives and similar repositories for Eagle
Users that are interested in Eagle are comparing it to the libraries listed below
Sorting:
- ☆40Updated 7 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆82Updated last year
- Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…☆29Updated 3 years ago
- ☆26Updated 3 months ago
- ☆78Updated 11 years ago
- MOsaic CHromosomal Alterations (MoChA) caller☆87Updated last month
- ☆68Updated last week
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆107Updated 4 years ago
- RFMIX - Local Ancestry and Admixture Inference Version 2☆89Updated 2 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- Genetic maps interpolated to sites in the 1000 Genomes project☆50Updated 10 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 8 years ago
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- BISulfite-seq CUI Toolkit☆66Updated 8 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Burden testing against public controls☆50Updated last year
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 2 months ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- identifying mutational significance in cancer genomes☆61Updated 2 years ago