seppinho / mutserveLinks
mtDNA Variant Caller
☆34Updated 5 months ago
Alternatives and similar repositories for mutserve
Users that are interested in mutserve are comparing it to the libraries listed below
Sorting:
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 3 months ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆36Updated last month
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆44Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 5 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- ☆39Updated last year
- for visual evaluation of read support for structural variation☆54Updated last year
- ENCODE long read RNA-seq pipeline☆47Updated 2 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 4 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆41Updated last month
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 3 weeks ago
- QDNAseq package for Bioconductor☆50Updated 10 months ago
- Burden testing against public controls☆50Updated last year
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 9 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Detection of CNVs (deletion/duplication) in target panel based NGS data☆16Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆21Updated 5 years ago
- Digenome-toolkit ver2.☆16Updated 3 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆65Updated last year
- Structural Variant Prediction Viewer☆34Updated 7 years ago