seppinho / mutserveLinks
mtDNA Variant Caller
☆34Updated 8 months ago
Alternatives and similar repositories for mutserve
Users that are interested in mutserve are comparing it to the libraries listed below
Sorting:
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 7 months ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- TIDDIT - structural variant calling☆76Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆50Updated 3 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆50Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 4 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆50Updated 2 years ago
- Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of func…☆28Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- for visual evaluation of read support for structural variation☆54Updated last year
- CN-Learn☆30Updated 5 years ago
- BigWig and BAM utilities☆97Updated last year
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆66Updated 2 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆42Updated 3 weeks ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- A software for calculating telomere length☆71Updated 6 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆66Updated last week
- Tip and tricks for BAM files☆86Updated 7 years ago
- Long-read Isoform Quantification and Analysis☆38Updated 5 months ago
- QDNAseq package for Bioconductor☆51Updated last year
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago