Alternatives and similar repositories for MetaMinimac2

Users that are interested in MetaMinimac2 are comparing it to the libraries listed below

• ywchoi / phasing
  Evaluation of phasing performance
  ☆23Updated 7 years ago
• hmgu-itg / VCF-liftover
  Liftover VCF files
  ☆18Updated 8 years ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆49Updated 3 years ago
• Illumina / Gauchian
  A variant caller for the GBA gene using WGS data
  ☆22Updated 10 months ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• talkowski-lab / gnomad-sv-pipeline
  Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)
  ☆36Updated 4 years ago
• talkowski-lab / svtk
  ☆35Updated 4 years ago
• genepi / haplocheck
  Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies
  ☆18Updated last year
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated 2 months ago
• YingZhou001 / IBDkin
  IBD based kinship estimation
  ☆14Updated 2 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• VCCRI / SVPV
  Structural Variant Prediction Viewer
  ☆34Updated 7 years ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆29Updated 10 months ago
• andrewSharo / StrVCTVRE
  StrVCTVRE, a structural variant classifier for exonic deletions and duplications
  ☆18Updated last year
• macarthur-lab / tx_annotation
  Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…
  ☆33Updated 3 years ago
• ctsa / svtools
  Tools for processing and analyzing structural variants.
  ☆33Updated 9 years ago
• PacificBiosciences / pb-human-wgs-workflow-wdl
  ☆12Updated last year
• bcbio / bcbio_validations
  Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses
  ☆31Updated 3 years ago
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆36Updated 11 months ago
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆50Updated 9 months ago
• jeremymcrae / clinical-filter
  filtering trio-based genetic variants in VCFs for clinical review
  ☆21Updated 4 years ago
• mulinlab / VarNote
  Fast and scalable variant annotation tool
  ☆30Updated 3 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 3 months ago
• cphgeno / CNVbench
  Benchmarking of CNV calling tools
  ☆18Updated 6 years ago
• GeneDx / scramble
  ☆39Updated last year
• TheJacksonLaboratory / SVE
  ☆51Updated 5 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• Helix-Research-Lab / PGxPOP
  PGxPOP
  ☆17Updated 2 years ago
• ImperialCardioGenetics / UTRannotator
  VEP Plugin to annotate high-impact five prime UTR variants
  ☆27Updated 9 months ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆36Updated 8 years ago