Alternatives and similar repositories for locuscompare

Users that are interested in locuscompare are comparing it to the libraries listed below

• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆18Updated 11 months ago
• single-cell-genetics / limix_qtl
  ☆20Updated 10 months ago
• MRCIEU / PhenoSpD
  ☆18Updated 7 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆22Updated 7 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆17Updated 9 years ago
• Kyoko-wtnb / FUMA_scRNA_data
  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)
  ☆23Updated 5 years ago
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆17Updated 2 years ago
• thewonlab / H-MAGMA
  ☆32Updated last year
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆18Updated 2 years ago
• yanglab-emory / TIGAR
  ☆21Updated last month
• hakyimlab / PredictDB_Pipeline_GTEx_v7
  PredictDB Pipeline for GTEx v7 data
  ☆17Updated 2 years ago
• jbryois / scRNA_disease
  Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1
  ☆18Updated 5 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆13Updated 2 years ago
• anastasia-lucas / hudson
  An R package for creating mirrored Manhattan plots
  ☆18Updated 2 years ago
• ZikunY / CARMA
  GWAS genetics Fine-mapping method
  ☆23Updated 6 months ago
• Marijn-Schipper / FLAMES
  FLAMES: Accurate gene prioritization in GWAS loci
  ☆34Updated 2 months ago
• gusevlab / stratAS
  🌓 Allele specific analyses across cell states and conditions
  ☆10Updated 2 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 years ago
• jrs95 / gassocplot2
  Regional association plots
  ☆25Updated last year
• hakyimlab / gtex-gwas-analysis
  ☆22Updated 3 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆21Updated 2 years ago
• PejLab / Pantry
  Pan-transcriptomic phenotyping
  ☆17Updated 2 weeks ago
• Tuteja-Lab / TissueEnrich
  R package for tissue-specific gene enrichment
  ☆14Updated 3 years ago
• LieberInstitute / brainseq_phase2
  BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
  ☆10Updated last year
• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 3 years ago
• hbliu / Kidney_Epi_Pri
  Kidney Epigenome and Transcriptome-based multi-stage Prioritization
  ☆17Updated 2 years ago
• bhattacharya-a-bt / isotwas
  ☆21Updated 4 months ago
• Jeremy37 / AD_finemap
  Code supporting analyses in paper on fine-mapping AD loci
  ☆15Updated 3 years ago