Alternatives and similar repositories for locuscompare

Users that are interested in locuscompare are comparing it to the libraries listed below

• RebeccaFine / benchmarker
  Benchmarking gene and variant prioritization algorithms for GWAS data
  ☆15Updated 5 years ago
• oliviasabik / RACER
  An R package for generating comparative regional association plots
  ☆18Updated 4 months ago
• single-cell-genetics / limix_qtl
  ☆20Updated 6 months ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• natsuhiko / PHM
  Pairwise Hierarchical Model
  ☆20Updated 3 years ago
• yanglab-emory / TIGAR
  ☆22Updated 3 weeks ago
• hakyimlab / gtex-gwas-analysis
  ☆24Updated 4 years ago
• sb452 / mr-code
  Code for implementing Mendelian randomization investigations
  ☆20Updated 10 years ago
• MRCIEU / PhenoSpD
  ☆18Updated 8 years ago
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆35Updated 5 years ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆27Updated 3 months ago
• rujinwang / EPIC
  cEll tyPe enrIChment
  ☆16Updated 3 years ago
• RajLabMSSM / catalogueR
  Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
  ☆14Updated 3 years ago
• immunogenomics / IMPACT
  Code for creating cell-type-specific regulatory element annotation files
  ☆19Updated last year
• dcalderon / rolypoly
  Method for identifying trait-relevant gene annotations from GWAS summary statistics.
  ☆18Updated 3 years ago
• caleblareau / bap
  Bead-based single-cell atac processing
  ☆33Updated 4 years ago
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated 3 weeks ago
• LieberInstitute / brainseq_phase2
  BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
  ☆11Updated 2 years ago
• bvoightlab / ColocQuiaL
  Pipeline for multiplex computing of statistical colocalization via COLOC between GWAS and QTL data.
  ☆21Updated 5 months ago
• bhattacharya-a-bt / MOSTWAS
  Multi-Omic Strategies for TWAS
  ☆13Updated 2 years ago
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆21Updated 6 years ago
• bogdanlab / RHOGE
  Estimate genetic correlation using predicted expression
  ☆24Updated 7 years ago
• kjgleason / Primo
  Primo
  ☆16Updated 4 years ago
• thewonlab / H-MAGMA
  ☆35Updated 2 years ago
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago
• Nealelab / UKBB_ldsc_scripts
  Scripts used for generating Neale Lab UKB results
  ☆21Updated 3 years ago
• stephenslab / gtexresults
  Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…
  ☆24Updated 2 years ago
• xqwen / torus
  QTL Discovery using Annotations
  ☆28Updated 3 years ago
• wesleycrouse / bmediatR
  Bayesian model selection approach for mediation
  ☆12Updated 2 years ago
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 7 months ago