paulhager / smart-phaseLinks
A comprehensive and intelligent clinical phasing tool
☆14Updated 3 years ago
Alternatives and similar repositories for smart-phase
Users that are interested in smart-phase are comparing it to the libraries listed below
Sorting:
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 6 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Split a BAM file by haplotype support☆16Updated 8 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated 2 weeks ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 4 years ago
- ☆16Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28Updated last year
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- ☆13Updated 3 years ago
- Removing PCR duplicates for sequencing reads.☆14Updated 5 years ago
- Benchmarking variant calling in polyploids☆15Updated 4 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 2 months ago
- Mapping-free variant caller for short-read Illumina data☆20Updated 5 years ago
- ☆11Updated 2 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆18Updated 5 years ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Updated 6 years ago
- ☆12Updated 4 years ago
- ☆10Updated 10 months ago
- Ultra-efficient mapping-free structural variation genotyper☆20Updated 4 years ago
- Unfazed by genomic variant phasing☆27Updated last year
- mreps: software for tandem repeat identification in DNA☆15Updated 6 years ago
- Hemang Parikh☆11Updated 10 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Non-parametric structural variant genotyper☆15Updated 4 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago