weizhouUMICH / SAIGELinks
☆195Updated 3 years ago
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below
Sorting:
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆197Updated 2 years ago
- Repo for the R package coloc☆178Updated 2 months ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- ☆99Updated 3 years ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆124Updated 10 months ago
- High-definition likelihood inference of genetic correlations (HDL)☆123Updated 3 months ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆199Updated last year
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated 3 weeks ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆232Updated last week
- Visualization of Colocalization Between eQTL and GWAS Data☆85Updated 3 years ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 10 months ago
- A factor analysis package☆101Updated 13 years ago
- Ultrafast GPU-enabled QTL mapper☆191Updated 3 months ago
- Polygenic prediction via continuous shrinkage priors☆189Updated 10 months ago
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆87Updated last month
- Linking GWAS data to analytical tools in R☆148Updated 3 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆72Updated 4 years ago
- Cross-population polygenic prediction☆90Updated 10 months ago
- Sequence kernel association test (SKAT)☆52Updated 2 months ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆241Updated last month
- Development for SAIGE and SAIGE-GENE(+)☆82Updated 3 weeks ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆55Updated 4 months ago
- MetaXcan software and manuscript☆173Updated 3 months ago
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 3 years ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆69Updated 3 months ago
- PrediXcan Project☆112Updated 2 years ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆157Updated last month