weizhouUMICH / SAIGE
☆194Updated 3 years ago
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below
Sorting:
- Repo for the R package coloc☆164Updated 3 weeks ago
- methods for functional summary-based imputation☆83Updated 2 years ago
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆182Updated last year
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆213Updated 3 months ago
- ☆97Updated 2 years ago
- Development for SAIGE and SAIGE-GENE(+)☆75Updated this week
- Codebook from my GWAS cookbook☆190Updated 2 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆114Updated 5 months ago
- High-definition likelihood inference of genetic correlations (HDL)☆110Updated last month
- A tool to build a website to browse hundreds or thousands of GWAS.☆176Updated 9 months ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆198Updated 8 months ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago
- Cross-population polygenic prediction☆80Updated 5 months ago
- Rare variant test software for next generation sequencing data☆139Updated 3 years ago
- Polygenic prediction via continuous shrinkage priors☆174Updated 5 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆50Updated 7 months ago
- A factor analysis package☆100Updated 13 years ago
- Linking GWAS data to analytical tools in R☆136Updated 2 years ago
- Ultrafast GPU-enabled QTL mapper☆178Updated 2 months ago
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆80Updated last month
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆207Updated this week
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆113Updated 2 years ago
- Main ricopili repo for public releases☆47Updated last month
- An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline☆64Updated last month
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆150Updated 3 months ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆172Updated 5 months ago
- Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform☆60Updated this week
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆131Updated last month
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆31Updated last year
- MetaXcan software and manuscript☆160Updated 2 weeks ago