weizhouUMICH / SAIGELinks
☆193Updated 3 years ago
Alternatives and similar repositories for SAIGE
Users that are interested in SAIGE are comparing it to the libraries listed below
Sorting:
- Python command line tool for Multi-Trait Analysis of GWAS (MTAG)☆195Updated 2 years ago
- methods for functional summary-based imputation☆87Updated 3 years ago
- ☆98Updated 3 years ago
- PolyFun (POLYgenic FUNctionally-informed fine-mapping)☆122Updated 8 months ago
- Repo for the R package coloc☆171Updated 3 weeks ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated last year
- Ultrafast GPU-enabled QTL mapper☆189Updated 2 months ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- High-definition likelihood inference of genetic correlations (HDL)☆121Updated 2 months ago
- Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool☆174Updated 8 months ago
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆224Updated 2 months ago
- A factor analysis package☆100Updated 13 years ago
- Visualization of Colocalization Between eQTL and GWAS Data☆84Updated 3 years ago
- Cross-population polygenic prediction☆88Updated 9 months ago
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆199Updated last year
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.☆115Updated 2 years ago
- Polygenic prediction via continuous shrinkage priors☆188Updated 9 months ago
- Analyses conducting GWAS across the UKBB diverse superpopulations☆52Updated 3 months ago
- Linking GWAS data to analytical tools in R☆143Updated 3 years ago
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Rapid standardisation and quality control of GWAS or QTL summary statistics☆86Updated this week
- PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank☆19Updated 3 years ago
- A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.☆70Updated 4 years ago
- A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/☆232Updated 3 weeks ago
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆143Updated 3 weeks ago
- GWAS Summary Statistics Data Harmonisation☆23Updated 2 months ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆156Updated last week
- topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple p…☆67Updated 10 months ago
- Harmonise GWAS summary statistics against a reference VCF☆41Updated 4 years ago