deruncie / GridLMM
GridLMM package
☆39Updated last year
Alternatives and similar repositories for GridLMM:
Users that are interested in GridLMM are comparing it to the libraries listed below
- Effective Computing—Resources for Computational Biologists☆26Updated 4 years ago
- R package for fitting high-dimensional multivariate linear mixed effect models☆35Updated 4 months ago
- A matrix-like wrapper around PLINK .bed files☆18Updated 4 months ago
- An R package for multivariate adaptive shrinkage.☆91Updated 2 months ago
- Mixed models @lme4 + custom covariances + parameter constraints☆50Updated 4 years ago
- Learn and validate subtypes from multiple traits☆20Updated 3 years ago
- Generalized linear Mixed Model Association Tests☆38Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 3 months ago
- Quantitative Trait Cluster Association Test in R☆25Updated 3 years ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 3 years ago
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated last week
- R package to estimate kinship and FST from SNP data☆19Updated 3 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆32Updated 8 months ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Updated 4 years ago
- TOP results by CONfident efFECT Sizes.☆14Updated last month
- Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…☆14Updated 5 years ago
- Statistical properties of polygenic risk scores☆19Updated 5 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆50Updated 2 years ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Updated last year
- ☆15Updated 7 years ago
- Data management of large-scale whole-genome sequence variant calls (Development version only)☆45Updated last week
- tools to efficiently retrieve and calculate LD☆32Updated 3 years ago
- Interface to various variant calling formats.☆26Updated 7 months ago
- Statistical GENetics Input/Output Functions☆17Updated 5 months ago
- Sample code for ldsc analyses in UKBB☆30Updated last year
- Glimma R package☆50Updated 4 months ago
- Independent Hypothesis Weighting☆15Updated last year
- R package to model and simulate admixed populations☆8Updated last year