deruncie / GridLMM

Related projects ⓘ

Alternatives and complementary repositories for GridLMM

• deruncie / MegaLMM
  R package for fitting high-dimensional multivariate linear mixed effect models
  ☆35Updated 2 months ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆24Updated 4 years ago
• QuantGen / BEDMatrix
  A matrix-like wrapper around PLINK .bed files
  ☆18Updated 2 months ago
• stephenslab / mashr
  An R package for multivariate adaptive shrinkage.
  ☆88Updated 2 weeks ago
• variani / lme4qtl
  Mixed models @lme4 + custom covariances + parameter constraints
  ☆48Updated 3 years ago
• kevinblighe / RegParallel
  Standard regression functions in R enabled for parallel processing over large data-frames.
  ☆37Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 5 years ago
• QuantGen / BGData
  A Suite of Packages for Analysis of Big Genomic Data
  ☆34Updated last year
• Shians / Glimma
  Glimma R package
  ☆50Updated 2 months ago
• kassambara / fastqcr
  fastqcr: Quality Control of Sequencing Data
  ☆68Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆28Updated last year
• andywdahl / rgwas
  Learn and validate subtypes from multiple traits
  ☆20Updated 3 years ago
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 3 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆44Updated 9 months ago
• bogdanlab / h2-GRE
  Implemention of Accurate estimation of SNP-heritability from biobank-scale data irrespective of genetic architecture. (Nature Genetics 20…
  ☆14Updated 5 years ago
• StoreyLab / popkin
  R package to estimate kinship and FST from SNP data
  ☆19Updated last month
• mturchin20 / bmass
  R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)
  ☆10Updated 4 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆36Updated last year
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆33Updated 6 years ago
• pfh / topconfects
  TOP results by CONfident efFECT Sizes.
  ☆14Updated last year
• zhanxw / seqminer
  Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R
  ☆30Updated last month
• stephaniehicks / qsmooth
  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…
  ☆50Updated 2 years ago
• StoreyLab / bnpsd
  R package to model and simulate admixed populations
  ☆8Updated last year
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated 2 months ago
• astheeggeggs / UKBB_ldsc_r2
  genetic correlation between phenotypes in the UK biobank
  ☆13Updated 9 months ago
• seandavi / Bioc2017BigDataWorkshopSession
  Tutorial for working with cloud infrastructure and AWS from R
  ☆20Updated 7 years ago
• n-mounier / bGWAS
  R package to perform Bayesian Genome-Wide Association Studies
  ☆38Updated last year
• rivas-lab / public-resources
  Repository for resources we'd like to share with the community.
  ☆24Updated 2 years ago
• shaunpwilkinson / aphid
  Analysis with Profile Hidden Markov Models
  ☆22Updated 4 months ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 7 years ago