Alternatives and similar repositories for osca

Users that are interested in osca are comparing it to the libraries listed below

• xihaoli / MetaSTAAR
  An R package for performing MetaSTAAR procedure in whole-genome sequencing studies
  ☆25Updated last year
• saralpulit / gwas-scripts
  A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizin…
  ☆20Updated 8 years ago
• zhouhufeng / FAVORannotator
  ☆21Updated 2 years ago
• pgxcentre / region-plot
  A tool to plot significant regions of GWAS
  ☆29Updated 2 years ago
• broadinstitute / gtex-v8
  Notebooks and scripts for reproducing analyses and figures from the V8 GTEx Consortium paper
  ☆43Updated 11 months ago
• getian107 / SuSiEx
  Cross-population fine-mapping
  ☆39Updated 11 months ago
• yiminghu / post-GWAS-pipeline
  A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data
  ☆29Updated 3 years ago
• WansonChoi / HATK
  A collection of modules to process and analyze IMGT-HLA sequences.
  ☆28Updated 2 years ago
• jinghuazhao / TWAS-pipeline
  TWAS-pipeline
  ☆24Updated 4 years ago
• bhattacharya-a-bt / isotwas
  ☆23Updated 3 months ago
• fhormoz / caviar
  ☆63Updated 3 years ago
• ksamocha / de_novo_scripts
  Script used to identify de novo variants from sequencing data.
  ☆11Updated 8 years ago
• mancusolab / twas_sim
  Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform …
  ☆29Updated 2 years ago
• andreyshabalin / MatrixEQTL
  Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
  ☆85Updated 2 years ago
• diptavo / MultiSKAT
  MultiSKAT is an R-package focused at rare-variant analysis of continuous multiple phenotype data. This project contains the R-codes/funct…
  ☆12Updated 6 years ago
• francois-a / fastqtl
  Enhanced version of the FastQTL QTL mapper
  ☆70Updated 2 years ago
• gkichaev / PAINTOR_V3.0
  Fast, integrative fine mapping with functional data
  ☆61Updated 6 years ago
• RajLabMSSM / ggLocusZoom
  Create LocusZoom-style plots in R.
  ☆22Updated 2 years ago
• xihaoli / STAARpipeline-Tutorial
  The tutorial for performing single-/multi-trait association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVOR…
  ☆32Updated 11 months ago
• immunogenomics / HLA-TAPAS
  HLA-TAPAS pipeline for HLA association and fine-mapping studies
  ☆54Updated last year
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• Xinglab / rMATS-long
  ☆34Updated last week
• hellbelly / BS-Snper
  ☆38Updated 4 years ago
• biosinodx / SCcaller
  Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data
  ☆35Updated 11 months ago
• douglasyao / mesc
  Mediated Expression Score Regression (MESC)
  ☆26Updated 2 weeks ago
• FINNGEN / finemapping-pipeline
  Statistical fine-mapping pipeline in FinnGen
  ☆30Updated last month
• xinhe-lab / ctwas
  causal TWAS (cTWAS)
  ☆47Updated last week
• xqwen / fastenloc
  Colocalization analysis of genetic association signals
  ☆53Updated 5 months ago
• DavidQuigley / WCDT_WGBS
  West Coast Dream Team Whole Genome Bisulfite Sequencing
  ☆15Updated last week
• twlab / TEProf2Paper
  TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data
  ☆27Updated 2 years ago