freeseek / gtc2vcfLinks
Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
☆156Updated 3 weeks ago
Alternatives and similar repositories for gtc2vcf
Users that are interested in gtc2vcf are comparing it to the libraries listed below
Sorting:
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- Software program for checking sample matching for NGS data☆135Updated last year
- Copy number calling and variant classification using targeted short read sequencing☆140Updated 3 weeks ago
- ☆180Updated 2 years ago
- Check strandedness of RNA-Seq fastq files☆125Updated 3 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 4 months ago
- ASCAT R package☆188Updated 6 months ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆151Updated 2 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 2 years ago
- GWAS Pipeline for H3Africa☆111Updated 3 months ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆187Updated last year
- Finder of Somatic Fusion Genes in RNA-seq data☆147Updated last week
- Learning the Variant Call Format☆144Updated last month
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- Plugins for the Ensembl Variant Effect Predictor (VEP)☆158Updated 3 weeks ago
- Generate IGV style locus tracks from bigWig files in R☆168Updated 10 months ago
- MOsaic CHromosomal Alterations (MoChA) caller☆87Updated 3 weeks ago
- WisecondorX — An evolved WISECONDOR☆102Updated 3 weeks ago
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆167Updated 4 months ago
- phasing and Allele Specific Expression from RNA-seq☆116Updated last year
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆262Updated 7 months ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆170Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆176Updated 2 weeks ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders☆154Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆93Updated 10 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago