Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF
☆165Feb 26, 2026Updated 7 months ago
Alternatives and similar repositories for gtc2vcf
Users that are interested in gtc2vcf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Script to convert GTC/BPM files to VCF☆48Oct 13, 2025Updated last year
- MOsaic CHromosomal Alterations (MoChA) caller☆94Aug 22, 2025Updated last year
- Python library to parse file formats related to Illumina bead arrays☆50Jan 30, 2025Updated last year
- ☆13Feb 10, 2021Updated 5 years ago
- HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.☆79Feb 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Mar 20, 2018Updated 8 years ago
- A Python package for pharmacogenomics (PGx) research☆98Aug 7, 2026Updated 2 months ago
- The Pharmacogenomic Clinical Annotation Tool☆195Sep 25, 2026Updated 2 weeks ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 9 years ago
- genotype :: ped correspondence check, ancestry check, sex check. directly, quickly on VCF☆152Feb 17, 2026Updated 7 months ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆87Sep 28, 2024Updated 2 years ago
- GenoTools: Advanced Genotype Data Analysis A robust suite for processing genotype data, offering genotype calling (.idat to PLINK), comp…☆37Sep 15, 2026Updated 3 weeks ago
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 8 years ago
- processing illumina SNP arrays☆20Feb 3, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A Rare Variant Caller for Array-based Genotyping☆25Feb 25, 2015Updated 11 years ago
- Haplotype phasing software☆72Dec 5, 2020Updated 5 years ago
- Applying polygenic scores (PGS) on imputed genotypes☆36Oct 28, 2025Updated 11 months ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆199May 2, 2022Updated 4 years ago
- cython + htslib == fast VCF and BCF processing☆450Sep 10, 2026Updated last month
- A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores☆210Apr 10, 2026Updated 6 months ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆198Apr 22, 2026Updated 5 months ago
- NiPTUNE. A Python library for NIPT analyses.☆11Nov 22, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A comprehensive tutorial about GWAS and PRS☆1,023Apr 1, 2023Updated 3 years ago
- ☆40Jan 24, 2018Updated 8 years ago
- Fast HLA type inference from whole-genome data☆149Apr 3, 2025Updated last year
- The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation☆178Jun 3, 2026Updated 4 months ago
- A BioWDL variantcalling pipeline for germline DNA data. Starting with FASTQ files to produce VCF files. Category:Multi-Sample☆26Jul 27, 2026Updated 2 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- A pipeline for the identification of Compound Heterozygous Variants☆10Nov 10, 2022Updated 3 years ago
- Segmented HAPlotype Estimation and Imputation Tool☆100May 19, 2026Updated 4 months ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆14Oct 7, 2026Updated last week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆86Jun 4, 2025Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆61May 30, 2022Updated 4 years ago
- Copy number vaiation detection from SNP arrays☆96May 19, 2024Updated 2 years ago
- DEPICT code, instructions and an example☆57Dec 10, 2025Updated 10 months ago
- Scripts for running a sibling GWAS☆16Mar 16, 2022Updated 4 years ago
- Personal Cancer Genome Reporter (PCGR)☆284Updated this week
- Spark VCF data source implementation for Dataframes☆15Jul 15, 2022Updated 4 years ago