A matrix-like wrapper around PLINK .bed files
☆19Sep 6, 2024Updated last year
Alternatives and similar repositories for BEDMatrix
Users that are interested in BEDMatrix are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read PLINK BED/BIM/FAM files into R☆44Jul 26, 2021Updated 5 years ago
- Statistical GENetics Input/Output Functions☆19Feb 20, 2025Updated last year
- R package to estimate kinship and FST from SNP data☆21Jan 27, 2026Updated 6 months ago
- This project extends R with a mechanism for efficient parallel data access by utilizing C++ shared memory. Large data objects can be acc…☆15May 4, 2026Updated 3 months ago
- a C++ API of htslib to be easily integrated and safely used. More importantly, it can be callled seamlessly in R/Python/Julia etc.☆26Jun 7, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Penalized least squares estimation using the Orthogonalizing EM (OEM) algorithm☆27Aug 8, 2024Updated 2 years ago
- ☆10Jun 29, 2021Updated 5 years ago
- snpnet - Efficient Lasso Solver for Large-scale genetic variant data☆21Mar 5, 2024Updated 2 years ago
- tools to efficiently retrieve and calculate LD☆33Sep 3, 2021Updated 4 years ago
- ☆19Jun 7, 2019Updated 7 years ago
- Crash Course on Approximate Bayesian Computation in Population Genetics☆11Sep 19, 2022Updated 3 years ago
- Impute to 1000 genomes efficiently by distributing to SGE, including alignment of target to reference, haplotyping, imputing, converting …☆14May 28, 2014Updated 12 years ago
- Intuitionistic Programming Language☆12Dec 28, 2013Updated 12 years ago
- Allele frequency filter app☆14May 4, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Regularization paths of linear, logistic, Poisson, or Cox models with overlapping grouped covariates☆21Feb 17, 2023Updated 3 years ago
- Repository to ZIP Plink2 LD files and have random access☆17Updated this week
- Groupoids vs 1-Types☆11Nov 8, 2018Updated 7 years ago
- sciFLT is a Fuzzy Logic Toolbox for scilab☆11Oct 8, 2019Updated 6 years ago
- Fast inference for Generalised Linear Mixed Models.☆14Jan 17, 2025Updated last year
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 5 years ago
- Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF☆36Jun 17, 2025Updated last year
- Read genomic data files (VCF, BCF, BGEN, PGEN, BED, H5AD, HDF5, DelayedArray) into R/Rcpp in chunks☆16Jul 21, 2026Updated 2 weeks ago
- A flexible tool for the multi-resolution localization of causal variants across the genome☆11Feb 19, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Sep 16, 2024Updated last year
- Lab best practices and policies to conduct open, reproducible, and inspiring science that is efficient and fun☆12Jun 9, 2026Updated 2 months ago
- AICS ML Segmentation (One-Way) Mirror☆28May 2, 2021Updated 5 years ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆36May 30, 2024Updated 2 years ago
- R package implementing an ALTREP class for memory-mapped vectors.☆38Jun 25, 2020Updated 6 years ago
- Linear mixed model for genomic analyses.☆120May 21, 2021Updated 5 years ago
- Julia package for performing rigorous arithmetic of Imprecise Probabilities with fuzzy numbers☆14Apr 5, 2024Updated 2 years ago
- ☆11May 6, 2021Updated 5 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆33Feb 23, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Constraint-based Learning with Neural Networks☆15Dec 7, 2020Updated 5 years ago
- 'htslib' based 'Duckdb' Extenstion for High Throughput Sequencing File Formats☆16Updated this week
- R package for quality control of plink genetic datasets☆69Mar 27, 2026Updated 4 months ago
- A BGEN file format reader.☆14Jun 17, 2024Updated 2 years ago
- Immune Profiling of Atherosclerotic Plaques Identifies☆10Sep 18, 2023Updated 2 years ago
- Generalized linear Mixed Model Association Tests☆49Nov 21, 2025Updated 8 months ago
- Repo for Dynamic Statistical Comparisons project☆13Feb 5, 2024Updated 2 years ago