QuantGen / BEDMatrixLinks
A matrix-like wrapper around PLINK .bed files
☆19Updated last year
Alternatives and similar repositories for BEDMatrix
Users that are interested in BEDMatrix are comparing it to the libraries listed below
Sorting:
- Mixed models @lme4 + custom covariances + parameter constraints☆53Updated 5 years ago
- Explore design matrices interactively with R/Shiny☆38Updated 3 months ago
- An R package for multivariate adaptive shrinkage.☆91Updated last year
- A Suite of Packages for Analysis of Big Genomic Data☆34Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Updated last month
- An R package for Poisson multivariate adaptive shrinkage.☆11Updated last year
- [DEPRECATED] Docker Images which include a complete installation of all software needed to build all Bioconductor packages☆25Updated 2 years ago
- ☆20Updated 3 months ago
- Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches☆44Updated last year
- R package to estimate kinship and FST from SNP data☆21Updated last week
- Effective Computing—Resources for Computational Biologists☆27Updated 5 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 6 months ago
- GridLMM package☆39Updated 3 months ago
- Automate package and project setup for Bioconductor packages☆54Updated 10 months ago
- R interface to 'Gos'☆39Updated 2 years ago
- Demonstration of the use of an R package to organize a data analysis project☆22Updated 5 years ago
- Standard regression functions in R enabled for parallel processing over large data-frames.☆38Updated 2 years ago
- An R package for adaptive shrinkage☆86Updated 6 months ago
- An htmlwidget version of igv, for RStudio and Shiny apps☆38Updated 5 months ago
- Genome Interval Arithmetic in R☆94Updated 3 weeks ago
- TOP results by CONfident efFECT Sizes.☆15Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 2 months ago
- ☆18Updated 8 years ago
- Representation and manipulation of genomic intervals☆46Updated last month
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated last week
- A Grammar of Data Manipulation for Omics Data☆21Updated 5 years ago
- Statistical GENetics Input/Output Functions☆18Updated 11 months ago
- Elastic, reproducible, and reusable genomic data science tools from R backed by cloud resources☆34Updated 4 years ago