PacificBiosciences / hg002-ccsLinks
☆15Updated 4 years ago
Alternatives and similar repositories for hg002-ccs
Users that are interested in hg002-ccs are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 months ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Updated 3 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated last year
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- ☆20Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- ☆12Updated 2 years ago
- ☆16Updated 9 months ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆16Updated 3 years ago
- Example datasets for CNVkit (http://github.com/etal/cnvkit)☆23Updated 7 years ago
- A python wrapper around SURVIVOR☆20Updated last year
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Updated last year
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆19Updated 2 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 7 months ago
- ☆35Updated 4 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 7 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Removing PCR duplicates for sequencing reads.☆14Updated 5 years ago
- Benchmarking variant calling in polyploids☆15Updated 3 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 6 months ago
- ☆12Updated 4 years ago
- ☆15Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago