Alternatives and similar repositories for hg002-ccs:

Users that are interested in hg002-ccs are comparing it to the libraries listed below

• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆12Updated 3 years ago
• gagneurlab / splicemap
  ☆20Updated 6 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• mccoy-lab / t2t-variants
  Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".
  ☆17Updated 2 years ago
• DecodeGenetics / LRS_SV_sets
  VCF files of SVs using long-read sequencing (LRS).
  ☆22Updated 3 years ago
• gymreklab / STRDenovoTools
  Toolkit for calling and analyzing de novo STR mutations
  ☆13Updated last year
• bio-ontology-research-group / DeepSVP
  Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
  ☆16Updated 3 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• daewoooo / StrandPhaseR
  R Package for phasing of single cell Strand-seq data
  ☆10Updated 3 months ago
• gjun / muCNV
  ☆20Updated last year
• fulcrumgenomics / fgsv
  Tools to gather evidence for structural variation via breakpoint detection.
  ☆19Updated 2 weeks ago
• rdemolgen / SavvySuite
  Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes
  ☆28Updated 9 months ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆12Updated 6 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• DecodeGenetics / popSTR
  PopSTR - A Population based microsatellite genotyper
  ☆32Updated last year
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• mcfrith / dnarrange
  ☆16Updated 3 months ago
• oscarlr / MsPAC
  Phase reads, assemble haplotypes and detect SVs
  ☆19Updated 4 years ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆31Updated last year
• broadinstitute / gnomad-mitochondria
  ☆13Updated last year
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• TomSkelly / MatchAnnot
  Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.
  ☆23Updated 9 years ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆14Updated 2 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 6 years ago
• lh3 / unicall
  A wrapper for calling small variants from human germline high-coverage single-sample Illumina data
  ☆14Updated 5 years ago
• kircherlab / CADD-SV
  CADD-SV – a framework to score the effect of structural variants
  ☆14Updated last month
• sinamajidian / phaseme
  A tool set to assess the quality of the per read phasing and reduce the errors.
  ☆12Updated 4 years ago
• collaborativebioinformatics / GeneVar
  ☆12Updated 3 years ago
• Mesh89 / TranSurVeyor
  A transposition caller.
  ☆10Updated last year
• liusihan / seGMM
  A new tool to infer sex from massively parallel sequencing data.
  ☆16Updated 10 months ago