Alternatives and similar repositories for mpd-perl:

Users that are interested in mpd-perl are comparing it to the libraries listed below

• wingolab-org / mpd-c
  Multiplex Primer Design
  ☆21Updated 4 years ago
• AkshathaPrasanna / Clin-mNGS
  Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data
  ☆17Updated 3 years ago
• MGI-tech-bioinformatics / SARS-CoV-2_Multi-PCR_v1.0
  SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data
  ☆20Updated 3 years ago
• jameslz / fastx-utils
  fastx-utils using klib
  ☆18Updated 4 years ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆16Updated 5 years ago
• jfarek / xatlas
  ☆29Updated 2 years ago
• stephenturner / adapters
  Adapters for trimming
  ☆30Updated 6 years ago
• PacificBiosciences / bam2fastx
  Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.
  ☆37Updated 2 years ago
• quwubin / paired-kmers
  finding conserved regions in highly diverse genomes
  ☆15Updated 9 months ago
• chizksh / digenome-toolkit2
  Digenome-toolkit ver2.
  ☆16Updated 3 years ago
• lh3 / treebest
  TreeBeST: Tree Building guided by Species Tree
  ☆14Updated 14 years ago
• OpenGene / UniqueKMER
  Generate unique KMERs for every contig in a FASTA file
  ☆48Updated 2 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• matted-zz / genome_coverage_plotter
  Simple script to generate whole-genome coverage plots
  ☆18Updated 9 years ago
• dellytools / svprops
  Computes various SV statistics
  ☆14Updated last year
• akiomiyao / tif
  Transposon Insertion Finder - Detection of new TE insertions in NGS data
  ☆20Updated 2 years ago
• dohalloran / PrimerView
  high-throughput primer design and graphical visualization
  ☆9Updated 7 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 7 years ago
• tao-bioinfo / readfq
  A simple tool to calculate reads number and total base count in FASTQ file
  ☆21Updated 6 years ago
• ProwlerForNanopore / ProwlerTrimmer
  Trimming tool for Oxford Nanopore sequence data
  ☆21Updated 3 years ago
• WenchaoLin / GCcalc
  Calculate circos format data of GC content and GC skew from genome data.
  ☆11Updated 10 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• a-slide / pycoMeth
  DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets
  ☆34Updated 4 years ago
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• czc / nb_distribution
  novoBreak: local assembly for breakpoint detection in cancer genomes
  ☆26Updated 7 years ago
• dellytools / sansa
  Structural variant VCF annotation, duplicate removal and comparison
  ☆33Updated 2 months ago
• dmiller903 / CompoundHetVIP
  A pipeline for the identification of Compound Heterozygous Variants
  ☆9Updated 2 years ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• czheluo / Circos-Pipeline
  circos pipeline
  ☆20Updated 4 years ago