wingolab-org / mpd-perlLinks
Multiplex Primer Design
☆12Updated 5 years ago
Alternatives and similar repositories for mpd-perl
Users that are interested in mpd-perl are comparing it to the libraries listed below
Sorting:
- Multiplex Primer Design☆22Updated 5 years ago
- SARS-CoV-2 analysis pipeline for multiplex-PCR MPS(Massive Parrallel Sequencing) data☆20Updated 4 years ago
- ☆33Updated 3 years ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆17Updated 8 months ago
- Simple script to generate whole-genome coverage plots☆19Updated 10 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Updated 8 years ago
- Generate unique KMERs for every contig in a FASTA file☆49Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- fastx-utils using klib☆20Updated 5 years ago
- This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical…☆42Updated 6 years ago
- HomBlocks: A multiple-alignment construction pipeline for organelle phylogenomics based on locally collinear block searching☆36Updated 8 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆35Updated 3 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31Updated last year
- ☆28Updated 3 years ago
- ☆36Updated last year
- Metagenomics microbial abundance quantification☆28Updated 3 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Updated 2 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- ☆29Updated 4 years ago
- A new tool to infer sex from massively parallel sequencing data.☆17Updated 8 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Computes various SV statistics☆14Updated 2 years ago
- Command line tool to plot genomic coverage from a BAM file☆14Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 9 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆47Updated 5 months ago
- circos pipeline☆20Updated 4 years ago
- BAMixChecker: A fast and efficient tool for sample matching checkup☆15Updated 3 years ago
- CNEFinder: Finding Conserved Non-coding Elements in Genomes☆25Updated 4 years ago