davidaknowles / eagleLinks
An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq
☆21Updated 3 years ago
Alternatives and similar repositories for eagle
Users that are interested in eagle are comparing it to the libraries listed below
Sorting:
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 4 years ago
- ☆21Updated 8 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- A Julia package for extracting mutation signatures using topic models☆19Updated 3 years ago
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 8 years ago
- ☆13Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated last year
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 6 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- Pairwise Hierarchical Model☆19Updated 3 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆28Updated 3 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated 2 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Updated 11 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆22Updated 4 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆16Updated last year
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- ☆10Updated 2 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- software package for integrative genetic association analysis☆35Updated 2 years ago
- Software Pipeline for Integrative Genetic Association Analysis: Probabilistic Assessment of Enrichment and Colocalization☆25Updated 5 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- eQTLHap: a comprehensive eQTL analysis tool.☆11Updated 4 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 7 months ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago