Alternatives and similar repositories for PRScs

Users that are interested in PRScs are comparing it to the libraries listed below

• weizhouUMICH / SAIGE
  ☆193Updated 3 years ago
• JonJala / mtag
  Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
  ☆188Updated last year
• getian107 / PRScsx
  Cross-population polygenic prediction
  ☆85Updated 7 months ago
• zhenin / HDL
  High-definition likelihood inference of genetic correlations (HDL)
  ☆116Updated this week
• rgcgithub / regenie
  regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
  ☆216Updated 3 weeks ago
• choishingwan / PRSice
  A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
  ☆199Updated 10 months ago
• chr1swallace / coloc
  Repo for the R package coloc
  ☆168Updated 2 months ago
• hakyimlab / MetaXcan
  MetaXcan software and manuscript
  ☆168Updated last month
• MRCIEU / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆147Updated last year
• GenomicSEM / GenomicSEM
  R-package for structural equation modeling based on GWAS summary data
  ☆234Updated 2 weeks ago
• Cloufield / gwaslab
  A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
  ☆219Updated last week
• hakyimlab / PrediXcan
  PrediXcan Project
  ☆112Updated 2 years ago
• choishingwan / PRS-Tutorial
  A tutorial on how to run basic polygenic risk score analysis
  ☆78Updated 2 years ago
• bvilhjal / ldpred
  ☆98Updated 3 years ago
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆180Updated 10 months ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆116Updated 6 months ago
• jianyangqt / gcta
  GCTA software
  ☆96Updated 3 months ago
• Nealelab / UK_Biobank_GWAS
  Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
  ☆364Updated 2 years ago
• Al-Murphy / MungeSumstats
  Rapid standardisation and quality control of GWAS or QTL summary statistics
  ☆81Updated this week
• pjgreer / ukb-rap-tools
  Scripts and workflows for use analyzing UK Biobank data from the DNANexus Research Analysis Platform
  ☆63Updated last week
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆192Updated 3 years ago
• privefl / bigsnpr
  R package for the analysis of massive SNP arrays.
  ☆208Updated this week
• saigegit / SAIGE
  Development for SAIGE and SAIGE-GENE(+)
  ☆76Updated this week
• PGScatalog / pgsc_calc
  The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
  ☆136Updated this week
• opain / GenoPred
  Genotype-based Prediction (GenoPred)
  ☆72Updated this week
• gusevlab / fusion_twas
  methods for functional summary-based imputation
  ☆85Updated 3 years ago
• josefin-werme / LAVA
  ☆69Updated 11 months ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆48Updated 2 months ago
• stephenslab / susieR
  R package for "sum of single effects" regression.
  ☆214Updated this week
• MichelNivard / awesome-complex-trait-genetics
  A list of awesome tools for complex trait genetics.
  ☆71Updated 4 months ago