seppinho / haplogrep-cmd
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
☆75Updated 2 years ago
Alternatives and similar repositories for haplogrep-cmd
Users that are interested in haplogrep-cmd are comparing it to the libraries listed below
Sorting:
- don't get DUP'ed or DEL'ed by your putative SVs.☆105Updated 4 years ago
- Data and information about the Polaris study☆53Updated 5 years ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- A suite of tools for detecting expansions of short tandem repeats☆80Updated last year
- ABRA2☆92Updated 2 years ago
- Structural Variant Index☆72Updated 5 months ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆69Updated 8 months ago
- This repository contains information about latest release from Genome in a Bottle project☆74Updated 5 years ago
- BAM Statistics, Feature Counting and Annotation☆149Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- ☆78Updated 11 years ago
- ☆39Updated last year
- ☆120Updated 6 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- R package designed to simplify structural variant analysis☆72Updated 3 years ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆49Updated last year
- A tool for profiling long STRs from short reads☆96Updated 4 years ago
- This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best Practices for germline SNP and In…☆52Updated 4 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆69Updated 3 months ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Read visualizer for structural variants☆83Updated 6 years ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆81Updated last week
- Tip and tricks for BAM files☆85Updated 6 years ago
- Thousand Variant Callers Project Repository☆72Updated 5 years ago
- Data from the Human PanGenomics Project☆60Updated 3 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆64Updated last year
- mtDNA Variant Caller☆34Updated 4 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago