HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
☆79Feb 28, 2023Updated 3 years ago
Alternatives and similar repositories for haplogrep-cmd
Users that are interested in haplogrep-cmd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A bioinformatics pipeline to analyze mtDNA from NGS data☆98Mar 5, 2024Updated 2 years ago
- Free mtDNA Haplogroup Classification Service☆34Jun 9, 2026Updated last month
- mtDNA Variant Caller☆35Dec 23, 2024Updated last year
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Yleaf software for human Y-chromosomal haplogroup inference from next generation sequencing data☆37Jun 24, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Phylogeny-based Contamination Detection in Mitochondrial and Whole-Genome Sequencing Studies☆17Jun 14, 2023Updated 3 years ago
- ☆16Apr 10, 2024Updated 2 years ago
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 2 years ago
- ☆11Feb 14, 2023Updated 3 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆25Nov 4, 2025Updated 8 months ago
- mitochondrial variant analysis tools☆15Mar 4, 2021Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Tools to convert Illumina IDAT/BPM/EGT/GTC and Affymetrix CEL/CHP files to VCF☆164Feb 26, 2026Updated 4 months ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- a tool for predicting mitochondrial DNA deletions using soft-clipping☆23Feb 3, 2022Updated 4 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data☆44Sep 8, 2025Updated 10 months ago
- Identifying Y-chromosome haplogroups in arbitrarily large samples of sequenced or genotyped men☆126Jul 16, 2026Updated last week
- ☆11Jun 19, 2026Updated last month
- Easy genetic ancestry predictions in Python☆69Updated this week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Benchmarking variant calling in polyploids☆16Nov 26, 2021Updated 4 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆16Oct 17, 2021Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- The Pharmacogenomic Clinical Annotation Tool☆183Updated this week
- Precision HLA typing from next-generation sequencing data☆220May 20, 2026Updated 2 months ago
- Tools to work with 23andMe and AncestryDNA raw files☆12Aug 5, 2017Updated 8 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Mar 25, 2022Updated 4 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 5 years ago
- PharmGKB NGS Pipeline☆19Oct 2, 2018Updated 7 years ago
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆406Jun 16, 2026Updated last month
- Indel caller for DNA-seq or RNA-seq☆16Aug 8, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Mar 10, 2018Updated 8 years ago
- Script to convert GTC/BPM files to VCF☆48Oct 13, 2025Updated 9 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- ☆53May 12, 2026Updated 2 months ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 6 years ago
- a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads☆216Jun 23, 2026Updated last month