seppinho / haplogrep-cmdLinks
HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
☆78Updated 2 years ago
Alternatives and similar repositories for haplogrep-cmd
Users that are interested in haplogrep-cmd are comparing it to the libraries listed below
Sorting:
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 5 years ago
- A suite of tools for detecting expansions of short tandem repeats☆83Updated 2 years ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆76Updated 5 months ago
- Data and information about the Polaris study☆54Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- Script to convert GTC/BPM files to VCF☆47Updated 2 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆107Updated 4 years ago
- BAM Statistics, Feature Counting and Annotation☆152Updated last week
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆99Updated 3 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Thousand Variant Callers Project Repository☆74Updated 6 years ago
- ☆54Updated 2 years ago
- ClassifyCNV: a tool for clinical annotation of copy-number variants☆69Updated 2 years ago
- R package designed to simplify structural variant analysis☆74Updated 3 years ago
- phasing and Allele Specific Expression from RNA-seq☆117Updated last year
- This repository contains information about latest release from Genome in a Bottle project☆75Updated 6 years ago
- TIDDIT - structural variant calling☆77Updated 8 months ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 7 months ago
- Platypus Variant Caller☆108Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated 2 years ago
- Structural Variant Index☆75Updated last year
- Mutation Identification Pipeline. Read the latest documentation:☆47Updated 3 weeks ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆72Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- Read visualizer for structural variants☆84Updated 7 years ago
- Powerful statistics for VCF files☆72Updated 3 weeks ago
- CNV screening and annotation tool☆25Updated 9 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago