statgen / EPACTS
☆34Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for EPACTS
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Updated 2 years ago
- Fast fusion detection using kallisto☆80Updated 3 weeks ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆32Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆39Updated 7 years ago
- Analysis from kallisto paper☆32Updated 8 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 3 years ago
- TOPMed analysis pipeline☆52Updated last year
- ☆24Updated 5 months ago
- R package designed to simplify structural variant analysis☆70Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Tools for bam file processing☆55Updated 9 years ago
- tools to efficiently retrieve and calculate LD☆32Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆28Updated 3 months ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆33Updated 6 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago
- Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach☆35Updated 13 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- ☆21Updated 3 months ago
- Genomic Association Tester☆29Updated last year
- ☆51Updated 5 years ago
- ☆18Updated 5 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆32Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆33Updated 5 years ago