Alternatives and similar repositories for EPACTS

Users that are interested in EPACTS are comparing it to the libraries listed below

• PapenfussLab / StructuralVariantAnnotation
  R package designed to simplify structural variant analysis
  ☆74Updated 4 years ago
• freeseek / gwaspipeline
  ☆40Updated 8 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• broadinstitute / gnomad_qc
  ☆68Updated last week
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆62Updated 6 years ago
• gatk-workflows / gatk3-4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools
  ☆54Updated 6 years ago
• UW-GAC / analysis_pipeline
  TOPMed analysis pipeline
  ☆52Updated 2 years ago
• AndreasHeger / gat
  Genomic Association Tester
  ☆35Updated 2 years ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 7 months ago
• getzlab / deTiN
  DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…
  ☆53Updated 3 years ago
• cancerit / ascatNgs
  Somatic copy number analysis using WGS paired end wholegenome sequencing
  ☆71Updated 5 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• mhguo1 / TRAPD
  Burden testing against public controls
  ☆50Updated last year
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆79Updated 7 months ago
• a-xavier / tapes
  TAPES : a Tool for Assessment and Prioritisation in Exome Studies
  ☆25Updated 4 months ago
• deaconjs / ThousandVariantCallersRepo
  Thousand Variant Callers Project Repository
  ☆74Updated 6 years ago
• cancerit / CaVEMan
  SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer sampl…
  ☆63Updated 9 months ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆38Updated 3 years ago
• vatlab / varianttools
  software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis
  ☆30Updated 4 years ago
• UW-GAC / GENESIS
  GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with popula…
  ☆43Updated 4 months ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated 2 months ago
• jlab-code / MethylStar
  A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.
  ☆37Updated 4 years ago
• hms-dbmi / spp
  SPP - R package for analysis of ChIP-seq and other functional sequencing data
  ☆43Updated 4 years ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago
• bioinfo-pf-curie / TMB
  Tumor Mutational Burden
  ☆63Updated 6 months ago
• atgu / hgdp_tgp
  ☆49Updated 6 months ago
• DaehwanKimLab / hisat-genotype
  ☆30Updated 4 years ago