molgenis / systemsgeneticsLinks
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
☆174Updated 9 months ago
Alternatives and similar repositories for systemsgenetics
Users that are interested in systemsgenetics are comparing it to the libraries listed below
Sorting:
- Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …☆224Updated last year
- Ultrafast GPU-enabled QTL mapper☆190Updated 2 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- A SingleCell RNASeq pre-processing snakemake workflow☆148Updated 2 years ago
- ☆194Updated 3 years ago
- A factor analysis package☆101Updated 13 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆95Updated 4 years ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆223Updated 4 months ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆170Updated 2 years ago
- deconstructSigs☆143Updated 2 years ago
- Rare variant test software for next generation sequencing data☆140Updated 3 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆147Updated 5 years ago
- ☆180Updated 2 years ago
- ATAC-seq and DNase-seq processing pipeline☆166Updated 3 years ago
- Detecting sites of genomic enrichment☆193Updated 2 years ago
- IDR☆172Updated 7 years ago
- ASCAT R package☆188Updated 6 months ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆165Updated 9 months ago
- R data package for annotating/converting Gene IDs☆167Updated 2 months ago
- methods for functional summary-based imputation☆88Updated 3 years ago
- A tool to build a website to browse hundreds or thousands of GWAS.☆185Updated last week
- AQUAS TF and histone ChIP-seq pipeline☆110Updated 3 years ago
- WGBS/NOMe-seq Data Processing & Differential Methylation Analysis☆145Updated 2 years ago
- Tutorials on accessing public reference and genomic data☆30Updated 7 months ago
- Codebook from my GWAS cookbook☆193Updated 3 years ago
- List of gene lists for genomic analyses.☆222Updated 3 years ago
- Linear mixed model for genomic analyses.☆107Updated 4 years ago
- Batch effects and the effective design of single-cell gene expression studies☆103Updated 6 years ago
- Generate IGV style locus tracks from bigWig files in R☆168Updated 10 months ago