Alternatives and similar repositories for systemsgenetics

Users that are interested in systemsgenetics are comparing it to the libraries listed below

• PMBio / peer
  A factor analysis package
  ☆101Updated 13 years ago
• broadinstitute / tensorqtl
  Ultrafast GPU-enabled QTL mapper
  ☆191Updated 3 months ago
• davidaknowles / leafcutter
  Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae …
  ☆224Updated last year
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆95Updated 4 years ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆170Updated 2 years ago
• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆147Updated 5 years ago
• ENCODE-DCC / chip-seq-pipeline
  ENCODE Uniform processing pipeline for ChIP-seq
  ☆123Updated 5 years ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆143Updated 2 years ago
• jsh58 / Genrich
  Detecting sites of genomic enrichment
  ☆194Updated 2 years ago
• zhanxw / rvtests
  Rare variant test software for next generation sequencing data
  ☆140Updated 3 years ago
• bli25 / RSEM_tutorial
  A short tutorial on how to use RSEM
  ☆138Updated 5 years ago
• hms-dbmi / scde
  R package for analyzing single-cell RNA-seq data
  ☆176Updated last year
• nboley / idr
  IDR
  ☆172Updated 7 years ago
• jdblischak / singleCellSeq
  Batch effects and the effective design of single-cell gene expression studies
  ☆104Updated 6 years ago
• vals / umis
  Tools for processing UMI RNA-tag data
  ☆131Updated 2 years ago
• JoniColeman / gwas_scripts
  Codebook from my GWAS cookbook
  ☆193Updated 3 years ago
• konradjk / loftee
  ☆180Updated 2 years ago
• Hoohm / dropSeqPipe
  A SingleCell RNASeq pre-processing snakemake workflow
  ☆148Updated 2 years ago
• weizhouUMICH / SAIGE
  ☆195Updated 3 years ago
• kundajelab / atac_dnase_pipelines
  ATAC-seq and DNase-seq processing pipeline
  ☆166Updated 3 years ago
• kundajelab / chipseq_pipeline
  AQUAS TF and histone ChIP-seq pipeline
  ☆111Updated 3 years ago
• al2na / methylKit
  R package for DNA methylation analysis
  ☆237Updated last month
• statgen / pheweb
  A tool to build a website to browse hundreds or thousands of GWAS.
  ☆185Updated 3 weeks ago
• im3sanger / dndscv
  dN/dS methods to quantify selection in cancer and somatic evolution
  ☆226Updated 4 months ago
• yupenghe / methylpy
  WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
  ☆146Updated 2 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated last week
• VanLoo-lab / ascat
  ASCAT R package
  ☆189Updated 3 weeks ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 3 months ago
• TrinityCTAT / Trinity_CTAT
  ☆119Updated 2 years ago
• omerwe / polyfun
  PolyFun (POLYgenic FUNctionally-informed fine-mapping)
  ☆124Updated 10 months ago