Alternatives and similar repositories for koopa

Users that are interested in koopa are comparing it to the libraries listed below

• koelling / amplimap
  amplicon/smMIP mapping and analysis pipeline
  ☆11Updated 3 years ago
• gabrielodom / pathwayPCA
  integrative pathway analysis with modern PCA methodology and gene selection
  ☆11Updated 2 years ago
• taylor-lab / annotateMaf
  Add functional variant annotation to MAF file
  ☆11Updated last year
• jrderuiter / geneviz
  Library for visualising genomic features in Python.
  ☆15Updated 8 years ago
• hartleys / JunctionSeq
  The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…
  ☆28Updated 8 years ago
• broadinstitute / gnomad_lof
  ☆12Updated 3 years ago
• bioturing / hera-t
  Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol
  ☆18Updated 4 years ago
• hammerlab / bai-indexer
  Build an index for your BAM Index (BAI)
  ☆17Updated 10 years ago
• roryk / bcbio.rnaseq
  Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …
  ☆24Updated 7 years ago
• datarail / rnaseq
  Deprecated, see https://labsyspharm.github.io/rnaseq/
  ☆12Updated 6 years ago
• omicidx / omicidx-parsers
  Exposing public genomics data via computable and searchable metadata
  ☆13Updated last year
• elsiklab / sashimiplot
  A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data
  ☆14Updated 4 years ago
• databio / bedshift
  Bedfile perturbation tool
  ☆17Updated 2 months ago
• ProSolo / prosolo
  ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.
  ☆21Updated 4 years ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated last year
• atgu / aou_gwas
  ☆14Updated last month
• drisso / mbkmeans
  K-means clustering for large single-cell datasets
  ☆12Updated 3 years ago
• InscriptaLabs / BioCantor
  ☆22Updated 2 years ago
• seandavi / MachineLearningIntro
  Machine learning use cases for teaching
  ☆13Updated 8 years ago
• statOmics / stageR
  stageR package
  ☆13Updated 2 years ago
• broadinstitute / wdl-runner
  Easily run WDL workflows on GCP
  ☆14Updated 4 years ago
• bioforensics / rsidx
  Library for indexing VCF files for random access searches by rsID
  ☆17Updated 4 months ago
• opentargets-archive / genetics-app
  Open Targets Genetics UI
  ☆15Updated 10 months ago
• VCCRI / dv-trio
  dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…
  ☆11Updated 4 years ago
• GSEA-MSigDB / ssGSEA-gpmodule
  A GenePattern module for running the ssGSEA method
  ☆14Updated 9 months ago
• YeoLab / qtools
  qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python
  ☆21Updated 2 years ago
• sentisci / fheatmap
  R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…
  ☆11Updated 9 years ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• Bioconductor / BiocFileCache
  Manage Files Across Sessions
  ☆13Updated last month
• BIGslu / kimma
  Kinship In Mixed Model Analysis of RNA-seq
  ☆13Updated 7 months ago