Estimate recombination rates from population genetic data
☆71Jun 10, 2020Updated 6 years ago
Alternatives and similar repositories for LDhat
Users that are interested in LDhat are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆44Nov 13, 2019Updated 6 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 6 years ago
- ☆11Mar 4, 2025Updated last year
- Software package for estimating fine-scale recombination rate.☆18Jun 8, 2021Updated 5 years ago
- Tools and Utilities for msmc and msmc2☆50Jan 23, 2026Updated 4 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tools to convert to and from vcf format☆14Jun 21, 2017Updated 8 years ago
- SMC++ infers population history from whole-genome sequence data.☆176Jan 20, 2024Updated 2 years ago
- Two locus likelihoods and ARGs under changing population size☆14Dec 18, 2025Updated 5 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆163Updated this week
- Estimate linkage disequilibrium between unphased loci☆11Jun 9, 2015Updated 11 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆208Aug 15, 2024Updated last year
- Haplotype based scans for selection☆148Jun 5, 2026Updated last week
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Feb 12, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 2 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Dec 11, 2022Updated 3 years ago
- Likelihood-based Selective Sweep Detection☆42Oct 12, 2023Updated 2 years ago
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Mar 19, 2026Updated 2 months ago
- methods for orphan gene prediction paper optimization☆25Dec 24, 2021Updated 4 years ago
- Infer demographic history with the Moran model☆51Jun 14, 2025Updated 11 months ago
- Programs to analyse NGS data for population genetics purposes☆181Aug 27, 2024Updated last year
- ☆70Dec 5, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆13Nov 25, 2024Updated last year
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆176Apr 17, 2026Updated last month
- predicting DFE and alpha from polymorphism data☆29Oct 4, 2018Updated 7 years ago
- A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".☆25May 3, 2026Updated last month
- ☆24Jun 9, 2017Updated 9 years ago
- General tools for genomic analyses.☆391Mar 25, 2026Updated 2 months ago
- Tools for inference of the DFE with dadi☆15Apr 16, 2021Updated 5 years ago
- Minimal Assumption Genomic Inference of Coalescence☆14Aug 8, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆51Nov 13, 2023Updated 2 years ago
- ☆46May 1, 2026Updated last month
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆15Aug 11, 2023Updated 2 years ago
- ☆17Dec 2, 2015Updated 10 years ago
- New version of mpMap☆12Jul 19, 2020Updated 5 years ago
- feature-based deep learning for the identification of selective sweeps☆59Mar 31, 2026Updated 2 months ago