mskilab-org / JaBbA
MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.
☆56Updated 7 months ago
Alternatives and similar repositories for JaBbA:
Users that are interested in JaBbA are comparing it to the libraries listed below
- Somatic structural variant caller for long-read data☆53Updated this week
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated 11 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆66Updated 4 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 4 months ago
- TIDDIT - structural variant calling☆73Updated this week
- ENCODE long read RNA-seq pipeline☆44Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- Tools for analyzing DNA methylation data☆36Updated last month
- Battenberg R package for subclonal copynumber estimation☆83Updated 2 months ago
- FusionInspector code☆57Updated 2 months ago
- ☆39Updated 8 months ago
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 2 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆37Updated 2 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆137Updated 7 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- BigWig and BAM utilities☆92Updated 9 months ago
- Tumor Mutational Burden☆55Updated 4 months ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- QDNAseq package for Bioconductor☆49Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆53Updated last month
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆57Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 3 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆102Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆74Updated last year
- R package designed to simplify structural variant analysis☆71Updated 3 years ago
- Long-read Isoform Quantification and Analysis☆39Updated last week
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- Allele-specific alignment sorting☆54Updated 2 years ago
- BISulfite-seq CUI Toolkit☆64Updated this week