Alternatives and similar repositories for Minimac3

Users that are interested in Minimac3 are comparing it to the libraries listed below

• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• poruloh / Eagle
  Haplotype phasing software
  ☆69Updated 5 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 4 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆33Updated 8 years ago
• awilfert / PSAP-pipeline
  ☆14Updated 8 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆52Updated 6 years ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆83Updated last year
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated 2 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆42Updated 4 years ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 3 years ago
• relipmoc / skewer
  ☆96Updated 3 years ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• GenomiqueENS / dockerfiles
  ☆83Updated 3 years ago
• yuchaojiang / CODEX2
  Full-spectrum copy number variation detection by high-throughput DNA sequencing
  ☆40Updated 4 years ago
• hartleys / QoRTs
  Quality of RNA-Seq Toolset
  ☆53Updated 6 years ago
• CshlSiepelLab / LINSIGHT
  ☆27Updated 7 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆99Updated last year
• heathsc / gemBS
  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…
  ☆32Updated 3 years ago
• smithlabcode / methpipe
  A pipeline for analyzing DNA methylation data from bisulfite sequencing.
  ☆71Updated 3 years ago
• slowkow / picardmetrics
  Run Picard on BAM files and collate 90 metrics into one file.
  ☆40Updated 8 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 7 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆79Updated 7 months ago
• ultimatesource / denovogear
  A program to detect denovo-variants using next-generation sequencing data.
  ☆55Updated 5 years ago
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆54Updated 8 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆50Updated 10 months ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆46Updated last year
• zhanxw / checkVCF
  Sanity check Variant Call Format (VCF) files.
  ☆37Updated 9 years ago