Santy-8128 / Minimac3Links
Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy.
☆29Updated 3 years ago
Alternatives and similar repositories for Minimac3
Users that are interested in Minimac3 are comparing it to the libraries listed below
Sorting:
- Haplotype phasing software☆67Updated 4 years ago
- ☆78Updated 11 years ago
- ☆14Updated 8 years ago
- An awk-like VCF parser☆56Updated last year
- Fast fusion detection using kallisto☆79Updated 4 months ago
- ☆27Updated 4 months ago
- R package for inferring copy number from read depth☆32Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- BigWig and BAM utilities☆98Updated last year
- ☆40Updated 7 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- A wrapper for liftOver for converting plink genotype data between different genome reference builds☆51Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆54Updated 8 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 4 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆41Updated 9 years ago
- ☆95Updated 3 years ago
- Maximum likelihood demultiplexing☆48Updated 8 months ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆82Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- ☆83Updated 3 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 5 months ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- ☆63Updated 4 years ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- A genotype query interface.☆136Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago