Alternatives and similar repositories for Minimac3

Users that are interested in Minimac3 are comparing it to the libraries listed below

• poruloh / Eagle
  Haplotype phasing software
  ☆67Updated 4 years ago
• arq5x / bedtools-protocols
  ☆78Updated 11 years ago
• freeseek / gwaspipeline
  ☆40Updated 7 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• awilfert / PSAP-pipeline
  ☆14Updated 7 years ago
• sritchie73 / liftOverPlink
  A wrapper for liftOver for converting plink genotype data between different genome reference builds
  ☆51Updated 6 years ago
• statgen / emeraLD
  tools to efficiently retrieve and calculate LD
  ☆33Updated 4 years ago
• CshlSiepelLab / LINSIGHT
  ☆26Updated 3 months ago
• cc2qe / vawk
  An awk-like VCF parser
  ☆56Updated last year
• najoshi / sabre
  ☆63Updated 4 years ago
• biocore-ntnu / snpflip
  Report reverse and ambiguous strand SNPs in GWAS data
  ☆33Updated 6 years ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• relipmoc / skewer
  ☆95Updated 3 years ago
• grenaud / deML
  Maximum likelihood demultiplexing
  ☆47Updated 7 months ago
• kingsfordgroup / sailfish
  Rapid Mapping-based Isoform Quantification from RNA-Seq Reads
  ☆126Updated 3 years ago
• Ettwiller / Damage-estimator
  Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…
  ☆53Updated 8 years ago
• statgen / gotcloud
  Genomes on the Cloud, Mapping & Variant Calling Pipelines
  ☆35Updated 8 years ago
• pmelsted / pizzly
  Fast fusion detection using kallisto
  ☆79Updated 3 months ago
• chrisamiller / readDepth
  R package for inferring copy number from read depth
  ☆32Updated 2 years ago
• statgen / locuszoom-standalone
  Create regional association plots from GWAS or meta-analysis
  ☆61Updated 5 years ago
• andrewparkermorgan / argyle
  An R package for import, QC and analysis of Illumina Infinium genotyping arrays
  ☆35Updated 7 years ago
• genepi / imputationserver
  Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…
  ☆82Updated last year
• gt1 / biobambam
  Tools for bam file processing
  ☆55Updated 10 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 6 years ago
• syntheke / bayesR
  Bayesian hierarchical model for complex trait analysis
  ☆45Updated last year
• MerrimanLab / selectionTools
  Pipeline to take VCF through to Selection Analysis.
  ☆58Updated 2 years ago
• Ripkelab / ricopili
  Main ricopili repo for public releases
  ☆49Updated 5 months ago
• COMBINE-lab / RapMap
  Rapid sensitive and accurate read mapping via quasi-mapping
  ☆89Updated 5 years ago
• hanchenphd / GMMAT
  Generalized linear Mixed Model Association Tests
  ☆44Updated last year
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆42Updated 4 years ago