Alternatives and similar repositories for GLIMPSE

Users that are interested in GLIMPSE are comparing it to the libraries listed below

• odelaneau / shapeit5
  Segmented HAPlotype Estimation and Imputation Tool
  ☆84Updated this week
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆161Updated 2 years ago
• CenterForMedicalGeneticsGhent / WisecondorX
  WisecondorX — An evolved WISECONDOR
  ☆101Updated last month
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆219Updated 7 months ago
• hall-lab / svtyper
  Bayesian genotyper for structural variants
  ☆134Updated 4 years ago
• BoevaLab / FREEC
  Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
  ☆164Updated 11 months ago
• Illumina / ExpansionHunter
  A tool for estimating repeat sizes
  ☆195Updated last year
• BGI-shenzhen / LDBlockShow
  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
  ☆185Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆191Updated this week
• hall-lab / svtools
  Tools for processing and analyzing structural variants.
  ☆154Updated 3 years ago
• PacificBiosciences / pbmm2
  A minimap2 frontend for PacBio native data formats
  ☆202Updated 5 months ago
• walaj / svaba
  Structural variation and indel detection by local assembly
  ☆247Updated last month
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆155Updated 2 years ago
• PacificBiosciences / pbsv
  pbsv - PacBio structural variant (SV) calling and analysis tools
  ☆155Updated 5 months ago
• epi2me-labs / wf-human-variation
  ☆131Updated 2 weeks ago
• parklab / bamsnap
  ☆123Updated last week
• DecodeGenetics / graphtyper
  Population-scale genotyping using pangenome graphs
  ☆189Updated 7 months ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆159Updated this week
• lgmgeo / AnnotSV
  Annotation and Ranking of Structural Variation
  ☆262Updated 3 weeks ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆270Updated 2 months ago
• vibansal / HapCUT2
  software tools for haplotype assembly from sequence data
  ☆222Updated 6 months ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆218Updated last month
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆108Updated 2 years ago
• abyzovlab / CNVnator
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
  ☆225Updated 3 years ago
• odelaneau / shapeit4
  Segmented HAPlotype Estimation and Imputation Tool
  ☆95Updated last year
• broadinstitute / gatk-docs
  Documentation archive for GATK tools and workflows
  ☆88Updated 5 years ago
• AstraZeneca-NGS / VarDict
  VarDict
  ☆198Updated last year
• freeseek / score
  Tools to work with GWAS-VCF summary statistics files
  ☆123Updated 3 weeks ago
• gatk-workflows / gatk4-germline-snps-indels
  Workflows for germline short variant discovery with GATK4
  ☆138Updated 4 years ago
• stevekm / IGV-snapshot-automator
  Script to automatically create and run IGV snapshot batchscripts
  ☆141Updated 2 years ago