Low Coverage Calling of Genotypes
☆176Jul 21, 2026Updated this week
Alternatives and similar repositories for GLIMPSE
Users that are interested in GLIMPSE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆67May 5, 2026Updated 2 months ago
- Segmented HAPlotype Estimation and Imputation Tool☆100May 19, 2026Updated 2 months ago
- Population-scale genotyping using pangenome graphs☆201Jan 9, 2025Updated last year
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆87Jan 19, 2026Updated 6 months ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Toolkit for calling structural variants using short or long reads☆115Jul 14, 2026Updated last week
- Maximum a posteriori estimate of contamination for ancient samples☆25Nov 4, 2025Updated 8 months ago
- EM-PCA for Ultra-low Coverage Sequencing Data☆19Dec 18, 2025Updated 7 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 3 years ago
- Bayesian haplotype-based mutation calling☆324Feb 13, 2026Updated 5 months ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Nov 9, 2024Updated last year
- structural variant calling and genotyping with existing tools, but, smoothly.☆266Jun 17, 2024Updated 2 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- A bioinformatics pipeline to phase and impute genetic data☆32Jul 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆28Mar 13, 2026Updated 4 months ago
- A structural variation pipeline for short-read sequencing☆205Updated this week
- ☆49Jun 26, 2026Updated 3 weeks ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Eigen tools by Nick Patterson and Alkes Price lab☆204Updated this week
- ☆15May 30, 2024Updated 2 years ago
- Pangenome-based genome inference☆176Jun 15, 2026Updated last month
- The next version of bwa-mem☆852Oct 15, 2025Updated 9 months ago
- Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)☆47Feb 23, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Read-based phasing of genomic variants, also called haplotype assembly☆423Jul 4, 2026Updated 2 weeks ago
- Plot structural variant signals from many BAMs and CRAMs☆572Jul 13, 2024Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆87Updated this week
- T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.☆107Updated this week
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆37Sep 13, 2023Updated 2 years ago
- Graph realignment tools for structural variants☆168Dec 8, 2022Updated 3 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆21Apr 9, 2025Updated last year
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆50Nov 13, 2023Updated 2 years ago
- A workflow for integrating ancient lineages into present-day phylogenies.☆32Updated this week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- The flare program performs local ancestry inference☆50Nov 4, 2025Updated 8 months ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated 10 months ago
- Annotation and Ranking of Structural Variation☆305Jun 19, 2026Updated last month
- OpenMendel package for haplotyping and imputation☆25Oct 8, 2025Updated 9 months ago
- ☆102Apr 22, 2024Updated 2 years ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆187Apr 12, 2024Updated 2 years ago