odelaneau / GLIMPSELinks
Low Coverage Calling of Genotypes
☆164Updated last month
Alternatives and similar repositories for GLIMPSE
Users that are interested in GLIMPSE are comparing it to the libraries listed below
Sorting:
- Tools to work with GWAS-VCF summary statistics files☆129Updated 4 months ago
- WisecondorX — An evolved WISECONDOR☆108Updated last month
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- Structural variation and indel detection by local assembly☆250Updated 3 months ago
- Jasmine: SV Merging Across Samples☆235Updated last year
- A tool for estimating repeat sizes☆200Updated last year
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆174Updated last year
- Documentation archive for GATK tools and workflows☆91Updated 5 years ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Tools for plotting methylation data in various ways☆166Updated last month
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆232Updated 3 years ago
- A structural variation pipeline for short-read sequencing☆200Updated last week
- Annotation and Ranking of Structural Variation☆278Updated 2 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆160Updated 10 months ago
- Bayesian genotyper for structural variants☆136Updated 4 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆166Updated 2 years ago
- Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants …☆174Updated 5 years ago
- A minimap2 frontend for PacBio native data formats☆207Updated last month
- Segmented HAPlotype Estimation and Imputation Tool☆96Updated last month
- LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files☆197Updated 6 months ago
- Bayesian haplotype-based mutation calling☆322Updated this week
- ☆122Updated 5 months ago
- Workflows for germline short variant discovery with GATK4☆139Updated 4 years ago
- ABRA2☆95Updated 3 years ago
- Tools for processing and analyzing structural variants.☆156Updated 3 years ago
- software tools for haplotype assembly from sequence data☆226Updated 10 months ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite