yycunc / SAMEclusteringLinks
SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
☆15Updated 4 years ago
Alternatives and similar repositories for SAMEclustering
Users that are interested in SAMEclustering are comparing it to the libraries listed below
Sorting:
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- ☆11Updated 5 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆41Updated last year
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆28Updated last year
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆15Updated 3 years ago
- CiteFuse:☆28Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- ☆18Updated 4 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆29Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 6 years ago
- ☆18Updated 4 years ago
- Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:☆24Updated 4 years ago
- Single-Cell Sequencing Quality Control and Processing Software☆30Updated 6 years ago
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- Regulatory networks with Direct Information☆17Updated 6 years ago
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Updated 4 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- ☆37Updated 2 weeks ago