yycunc / SAMEclusteringLinks
SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
☆15Updated 4 years ago
Alternatives and similar repositories for SAMEclustering
Users that are interested in SAMEclustering are comparing it to the libraries listed below
Sorting:
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆18Updated 4 years ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Automated marker-based annotation of cell types☆13Updated 3 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 4 years ago
- ☆19Updated 4 years ago
- benchmark for single-cell RNA-seq imputation methods☆29Updated last year
- ☆19Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 4 years ago
- Regulatory networks with Direct Information☆17Updated 6 years ago
- Multi-study integration of cellular trajectories☆19Updated 5 years ago
- CiteFuse:☆28Updated 2 years ago
- Negative binomial regression for Spatial Transcriptomics data as described in Maaskola et al. 2018☆22Updated 7 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated last year
- ☆11Updated 5 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- Quasilinear data representations for single-cell omics data analysis☆44Updated 2 years ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated last year
- ENHANCE: Accurate denoising of single-cell RNA-Seq data (Python implementation)☆14Updated 6 years ago
- ☆16Updated 8 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 4 years ago
- Fast motif matching in R☆46Updated last year
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 4 years ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆42Updated last year
- scRNA-seq clustering, visualization, and differential expression pipeline from Sims Lab papers☆22Updated 4 years ago
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆22Updated last year
- Inferring cell-cell interactions from pseudotime ordering of scRNA-Seq data☆25Updated 2 years ago