yycunc / SAMEclustering
SAME (Single-cell RNA-seq Aggregated clustering via Mixture model Ensemble): Cluster ensemble for single-cell RNA-seq data
☆14Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for SAMEclustering
- SAFE (Single-cell Aggregated clustering From Ensemble): Cluster ensemble for single-cell RNA-seq data☆16Updated 3 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆41Updated 4 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆29Updated 2 years ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Scripts for data and figure generation in SAVER paper☆17Updated 3 years ago
- ☆11Updated 4 years ago
- Bootstrap imputation for scRNAseq data☆12Updated 4 years ago
- Assembles a graph manifold from time series single-cell RNAseq data☆16Updated 3 years ago
- ☆15Updated 7 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 3 weeks ago
- BERMUDA (Batch Effect ReMoval Using Deep Autoencoders) is a novel transfer-learning-based method for batch correction in scRNA-seq data.☆27Updated 4 years ago
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Updated 2 years ago
- ☆10Updated last year
- ☆25Updated 3 years ago
- Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids☆25Updated last year
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆34Updated 3 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆19Updated 4 months ago
- Fast motif matching in R☆43Updated 9 months ago
- SOMatic is a tool for building Self-Organizing Maps and linking multiple maps.☆14Updated 2 months ago
- Multi-study integration of cellular trajectories☆18Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- ☆16Updated 3 years ago
- benchmark for single-cell RNA-seq imputation methods☆23Updated 8 months ago
- Regulatory networks with Direct Information in python☆38Updated last year
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- Regulatory networks with Direct Information☆16Updated 5 years ago
- Dynamical systems methods for RNA velocity analysis☆23Updated 3 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆33Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆20Updated 7 months ago