Eigen tools by Nick Patterson and Alkes Price lab
☆201Nov 3, 2023Updated 2 years ago
Alternatives and similar repositories for EIG
Users that are interested in EIG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Tools test whether admixture occurred and more☆225Sep 6, 2024Updated last year
- ☆95Jun 7, 2025Updated 10 months ago
- Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.☆11Mar 27, 2020Updated 6 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- The hap-ibd program detects identity-by-descent segments in phased genotype data.☆55Jun 11, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆51Apr 1, 2026Updated 3 weeks ago
- Low Coverage Calling of Genotypes☆168Updated this week
- R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)☆112Apr 17, 2026Updated last week
- Automatically exported from code.google.com/p/malder☆11Mar 17, 2015Updated 11 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆26Oct 29, 2020Updated 5 years ago
- SMC++ infers population history from whole-genome sequence data.☆173Jan 20, 2024Updated 2 years ago
- Maximum a posteriori estimate of contamination for ancient samples☆23Nov 4, 2025Updated 5 months ago
- AncestralPaths is a local ancestry painting technique based on genealogies produced by RELATE. The method aims to assign 'path' ancestrie…☆11Jun 29, 2023Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a c…☆498Updated this week
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Fast analysis and visualization of latent clusters in population genetic data☆78Mar 29, 2022Updated 4 years ago
- principal components population genetics analysis on linux☆21Aug 29, 2021Updated 4 years ago
- Repository with documentation file of our Jan 22-24 workshop on Computational Population Genetics in Jena, Germany.☆15May 9, 2019Updated 6 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 4 years ago
- Code to compute the XP-CLR statistic to infer natural selection☆106Jun 13, 2022Updated 3 years ago
- ☆40Jan 24, 2018Updated 8 years ago
- Program for analysing NGS data.☆258Mar 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A guide to manipulating genotypic data across the common formats: VCF, EIGENSTRAT and PLINK (PACKEDPED) files. Includes how to convert be…☆24Aug 9, 2023Updated 2 years ago
- A program to call variants from genome alignment☆83Apr 29, 2025Updated last year
- VCF-kit: Assorted utilities for the variant call format☆134Jul 10, 2025Updated 9 months ago
- ☆26Aug 10, 2021Updated 4 years ago
- Rapid population clustering with autoencoders☆87Sep 29, 2025Updated 7 months ago
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆147Mar 19, 2026Updated last month
- Genome Analysis Workshop (Jena 2016) material☆18Mar 3, 2017Updated 9 years ago
- Experimental EIGENSOFT performance improvements.☆21Nov 1, 2014Updated 11 years ago
- Fast Principal Component Analysis of Large-Scale Genome-Wide Data☆145Jul 26, 2022Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tutorial on using popular tools for learning about population history☆54Jul 18, 2018Updated 7 years ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆206Aug 15, 2024Updated last year
- Haplotype based scans for selection☆145Apr 1, 2026Updated 3 weeks ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14May 1, 2023Updated 2 years ago
- Module for analysing admixture graphs☆28Apr 30, 2018Updated 7 years ago
- Compute postmortem damage patterns and decontaminate ancient genomes☆20Apr 20, 2021Updated 5 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated last month