statgen / LDServer
Fast API server for calculating linkage disequilibrium
☆17Updated last year
Related projects ⓘ
Alternatives and complementary repositories for LDServer
- Open Targets Genetics UI☆14Updated last year
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- A rapido and lightweight method for PGS computation☆12Updated last month
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated last month
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- polygenic scores using variational inference on GWAS summary statistics from multiple cohorts☆11Updated last year
- Interactive eQTL visualizations☆13Updated last year
- ☆17Updated 3 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆23Updated last year
- Bedfile perturbation tool☆17Updated 11 months ago
- R interface to genome annotation files and the UCSC genome browser☆29Updated 3 months ago
- R package to model and simulate admixed populations☆8Updated last year
- GWAS and rare variants tests at high speed using regenie☆11Updated 5 months ago
- ☆25Updated 5 years ago
- Create LocusZoom-style plots in R.☆20Updated last year
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆17Updated 5 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 8 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- Data management of large-scale whole-genome sequence variant calls (Development version only)☆44Updated last week
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆12Updated 3 years ago
- A GWAS course☆12Updated 3 years ago
- Sample code for ldsc analyses in UKBB☆28Updated last year
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 3 years ago
- Interface to various variant calling formats.☆26Updated 5 months ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Examples of kallisto + sleuth☆11Updated 7 years ago
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆16Updated 2 weeks ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 7 months ago