statgen / LDServerLinks
Fast API server for calculating linkage disequilibrium
☆20Updated 9 months ago
Alternatives and similar repositories for LDServer
Users that are interested in LDServer are comparing it to the libraries listed below
Sorting:
- Open Targets Genetics UI☆15Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 8 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated this week
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆20Updated 2 years ago
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago
- R htmlwidget package for ideogram.js☆15Updated 3 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- Interactive eQTL visualizations☆13Updated 3 years ago
- Machine learning use cases for teaching☆13Updated 8 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆18Updated 2 months ago
- ldshrink: a one-stop R package for shrinkage estimation of linkage disequilibrium☆13Updated 4 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- A rapido and lightweight method for PGS computation☆14Updated 11 months ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- ☆10Updated 6 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆20Updated 3 months ago
- Interface to various variant calling formats.☆31Updated last year
- ☆22Updated 9 years ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- ☆18Updated 5 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Color DNA/RNA bases in terminal output☆21Updated 8 years ago