statgen / LDServerLinks
Fast API server for calculating linkage disequilibrium
☆20Updated 9 months ago
Alternatives and similar repositories for LDServer
Users that are interested in LDServer are comparing it to the libraries listed below
Sorting:
- Open Targets Genetics UI☆15Updated last year
- A tool to examine duplicate read characteristics in a BAM file☆12Updated 8 years ago
- Code and data resources accompanying Urbut et al (2017), "Flexible statistical methods for estimating and testing effects in genomic stud…☆24Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆30Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Building the constrained coding regions (CCR) model☆16Updated 7 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Estimate linkage disequilibrium between unphased loci☆11Updated 10 years ago
- ☆14Updated 5 months ago
- ☆18Updated 5 years ago
- Examples of kallisto + sleuth☆11Updated 8 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 9 years ago
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆29Updated 8 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- XL-mHG: A Semiparametric Test for Enrichment in Ranked Lists.☆13Updated 3 years ago
- Interface to various variant calling formats.☆31Updated last year
- Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)☆46Updated last week
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 6 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 4 months ago
- ☆13Updated 8 years ago
- Easily run WDL workflows on GCP☆14Updated 4 years ago
- Add functional variant annotation to MAF file☆11Updated last year
- R package to quickly obtain count vectors from indexed bam files☆15Updated 7 months ago
- Causal Variant Evidence Mapping with Non-parametric resampling☆12Updated 5 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Updated 9 years ago
- Hera-T, a fast and accurate tool for estimating gene abundances in single cell data generated by the 10X-Chromium protocol☆18Updated 4 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- ☆22Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago