statgen / savvyLinks
Interface to various variant calling formats.
☆31Updated last year
Alternatives and similar repositories for savvy
Users that are interested in savvy are comparing it to the libraries listed below
Sorting:
- Lossless VCF compression☆21Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago
- Genotype Representation Graph Library☆37Updated this week
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 9 months ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- ☆23Updated 2 weeks ago
- Toolkit for QTL mapping and meta-analysis.☆17Updated 3 years ago
- Allele frequency filter app☆14Updated 3 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- tools to efficiently retrieve and calculate LD☆33Updated 4 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- ☆14Updated 2 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 7 months ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 6 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17Updated 11 months ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆24Updated 4 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated 2 weeks ago
- Structural Variation breakpoint discovery via adaptive learning☆16Updated 2 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆23Updated 6 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Suite of heritability and genetic correlation estimation tools for exome-sequencing data☆35Updated 2 weeks ago