statgen / savvyLinks
Interface to various variant calling formats.
☆30Updated last year
Alternatives and similar repositories for savvy
Users that are interested in savvy are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆21Updated 2 weeks ago
- tools to efficiently retrieve and calculate LD☆33Updated 4 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Lossless VCF compression☆20Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆29Updated 5 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Allele frequency filter app☆14Updated 3 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated last week
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated last month
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 4 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- ☆16Updated last month
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Reducing reference bias using multiple population reference genomes☆32Updated last year
- UCSC liftOver (genome build converter) for vcf format☆12Updated 7 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Allele frequency filtering for Mendelian variant discovery☆18Updated 8 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Bedfile perturbation tool☆17Updated last year
- Interactive table from gemini output☆10Updated 6 years ago
- An Expectation-Maximization algorithm to infer mutational signatures☆25Updated 8 years ago