brentp / hileup
horizontal pileup
☆16Updated 2 years ago
Alternatives and similar repositories for hileup:
Users that are interested in hileup are comparing it to the libraries listed below
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 3 years ago
- ☆18Updated last month
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Location of public benchmarking; primarily final results☆18Updated last month
- Structural variant benchmark☆17Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- v2.x of the microassembly based somatic variant caller☆20Updated this week
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- Reducing reference bias using multiple population reference genomes☆32Updated 10 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 9 months ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- ☆20Updated 3 months ago
- The python binding for D4 format☆16Updated 3 years ago
- Detect novel (and reference) STR expansions from short-read data☆63Updated last year
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆26Updated 8 months ago
- TRGT Repeat expansion summary☆10Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- drunk on perbase pileups and lua expressions☆17Updated last year