brentp / hileupLinks
horizontal pileup
☆16Updated 2 years ago
Alternatives and similar repositories for hileup
Users that are interested in hileup are comparing it to the libraries listed below
Sorting:
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 5 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Updated 4 years ago
- Structural variant benchmark☆18Updated 5 months ago
- Sample Contamination Estimate from VCF☆20Updated 9 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 3 years ago
- drunk on perbase pileups and lua expressions☆19Updated 3 months ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Detect novel (and reference) STR expansions from short-read data☆67Updated 2 years ago
- The python binding for D4 format☆16Updated 3 years ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 6 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated 2 months ago
- Stupid Simple (ba)Sh Testing - A functional software testing framwork☆23Updated last year
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated 2 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- Python bindings to minimap2☆16Updated 7 years ago
- Variant Alert!, a framework to monitor every significant alteration in variant classification and gene-disease association between two ve…☆14Updated 4 years ago
- ☆31Updated 3 years ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 4 months ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago