brentp / hileup
horizontal pileup
☆16Updated 2 years ago
Alternatives and similar repositories for hileup:
Users that are interested in hileup are comparing it to the libraries listed below
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆32Updated 4 years ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆50Updated 4 years ago
- ☆18Updated 2 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- Structural variant benchmark☆17Updated last month
- drunk on perbase pileups and lua expressions☆17Updated last year
- Detect novel (and reference) STR expansions from short-read data☆64Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 2 months ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆13Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated 2 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A wrapper to Heng Li's kseq/readfq, an efficient FastQ/Fasta parser☆15Updated last year
- Sample Contamination Estimate from VCF☆19Updated 5 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- Structural variant pipeline☆17Updated 4 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 2 years ago
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- TRGT Repeat expansion summary☆10Updated 2 years ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last week
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated 3 weeks ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- v2.x of the microassembly based somatic variant caller☆20Updated 3 weeks ago
- Deep learning-based structural variant filtering method☆39Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 5 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆63Updated 2 years ago